Evidence map›Paper›PMID 26552885›Full record

ArticleDevelopment (Cambridge, England)2015

The auxin-inducible degradation (AID) system enables versatile conditional protein depletion in C. elegans.

Liangyu Zhang, Jordan D Ward, Ze Cheng, Abby F Dernburg

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 457 papers.

0numbers the graph read from it
0cells of the map it votes in
457citing papers in PubMed
33.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

457 citing papers in PubMed, 675 citations in OpenAlex.

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397 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 1 country.

Liangyu ZhangDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3220, USA Howard Hughes Medical Institute, 4000 Jones Bridge Road, Chevy Chase, MD 20815, USA Life Sciences Division, Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA California Institute for Quantitative Biosciences, Berkeley, CA 94720, USA.
Jordan D WardDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, USA.
Ze ChengDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3220, USA.
Abby F DernburgDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3220, USA Howard Hughes Medical Institute, 4000 Jones Bridge Road, Chevy Chase, MD 20815, USA Life Sciences Division, Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA California Institute for Quantitative Biosciences, Berkeley, CA 94720, USA afdernburg@berkeley.edu.
Lawrence Berkeley National Laboratory · USQB3 · USUniversity of California, Berkeley · USUniversity of California, San Francisco · US

Funding

GENE REGULATION BY STEROID RECEPTOR PROTEINSR01CA020535 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI YAMAMOTO, KEITH ROBERT · 1985 to 2018
$8.9M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Crossover control during meiosisR01GM065591 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI DERNBURG, ABBY F · 2002 to 2021
$4.5M
Transcriptional networks controlling molting in C. elegans and B. malayiK99GM107345 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WARD, JORDAN DAVID · 2014 to 2015
$180k
GENE REGULATION BY STEROID RECEPTOR PROTEINSR37CA020535 · NCI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI YAMAMOTO, KEITH ROBERT · 1990 to 1998
–
Howard Hughes Medical InstituteNCI NIH HHS CA20535NCI NIH HHS R01 CA020535NCI NIH HHS R37 CA020535NIGMS NIH HHS GM065591NIGMS NIH HHS K99 GM107345NIGMS NIH HHS K99GM107345NIGMS NIH HHS R01 GM065591NIH HHS P40 OD010440
6 · The paper itself

Abstract

Experimental manipulation of protein abundance in living cells or organisms is an essential strategy for investigation of biological regulatory mechanisms. Whereas powerful techniques for protein expression have been developed in Caenorhabditis elegans, existing tools for conditional disruption of protein function are far more limited. To address this, we have adapted the auxin-inducible degradation (AID) system discovered in plants to enable conditional protein depletion in C. elegans. We report that expression of a modified Arabidopsis TIR1 F-box protein mediates robust auxin-dependent depletion of degron-tagged targets. We document the effectiveness of this system for depletion of nuclear and cytoplasmic proteins in diverse somatic and germline tissues throughout development. Target proteins were depleted in as little as 20-30 min, and their expression could be re-established upon auxin removal. We have engineered strains expressing TIR1 under the control of various promoter and 3' UTR sequences to drive tissue-specific or temporally regulated expression. The degron tag can be efficiently introduced by CRISPR/Cas9-based genome editing. We have harnessed this system to explore the roles of dynamically expressed nuclear hormone receptors in molting, and to analyze meiosis-specific roles for proteins required for germ line proliferation. Together, our results demonstrate that the AID system provides a powerful new tool for spatiotemporal regulation and analysis of protein function in a metazoan model organism.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCytoplasmEmbryo LossFertilityGene DeletionGerm CellsIndoleacetic AcidsLarvaMeiosisNuclear ProteinsOrgan SpecificityProteolysisReceptors, Cytoplasmic and NuclearCaenorhabditis elegans ProteinsIndoleacetic AcidsNuclear ProteinsReceptors, Cytoplasmic and NuclearAuxinAuxin-inducible degradationC. elegansDegronGenetic toolTissue-specific depletion

Identifiers

PMID26552885
PMCPMC4689222
OpenAlexW2172886986

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.