Evidence map›Paper›PMID 26552850›Full record

ArticleProteomics2016

A targeted proteomic strategy for the measurement of oral cancer candidate biomarkers in human saliva.

Rebeca Kawahara, James G Bollinger, César Rivera, Ana Carolina P Ribeiro, Thaís Bianca Brandão, Adriana F Paes Leme, Michael J MacCoss

Open access · greenAbstract read
In one paragraph

Article in Proteomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 82 citations in OpenAlex.

  1. Review
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  15. LRG1: an emerging player in disease pathogenesis.Journal of biomedical science · 2022
    Review
  16. Article
  17. Review
  18. Article
  19. Transgelin-2: A Double-Edged Sword in Immunity and Cancer Metastasis.Frontiers in cell and developmental biology · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Rebeca KawaharaLaboratório de Espectrometria de Massas, Laboratório Nacional de Biociências, LNBio, CNPEM, Campinas, Brazil.
James G BollingerDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington, USA.
César RiveraLaboratório de Espectrometria de Massas, Laboratório Nacional de Biociências, LNBio, CNPEM, Campinas, Brazil.
Ana Carolina P RibeiroInstituto do Câncer do Estado de São Paulo, Octavio Frias de Oliveira, São Paulo, Brazil.
Thaís Bianca BrandãoInstituto do Câncer do Estado de São Paulo, Octavio Frias de Oliveira, São Paulo, Brazil.
Adriana F Paes LemeLaboratório de Espectrometria de Massas, Laboratório Nacional de Biociências, LNBio, CNPEM, Campinas, Brazil.
Michael J MacCossDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington, USA.
Brazilian Center for Research in Energy and Materials · BRInstituto do Câncer do Estado de São Paulo · BRUniversity of Washington · USBrazilian Biosciences National Laboratory · BR

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Skyline Targeted Proteomics EnvironmentR01GM103551 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2020
$3.4M
Self Correcting Nanoflow LC-MS for Clinical ProteomicsR01GM107142 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2013 to 2016
$1.5M
NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM103551NIGMS NIH HHS R01 GM107142
6 · The paper itself

Abstract

Head and neck cancers, including oral squamous cell carcinoma (OSCC), are the sixth most common malignancy in the world and are characterized by poor prognosis and a low survival rate. Saliva is oral fluid with intimate contact with OSCC. Besides non-invasive, simple, and rapid to collect, saliva is a potential source of biomarkers. In this study, we build an SRM assay that targets fourteen OSCC candidate biomarker proteins, which were evaluated in a set of clinically-derived saliva samples. Using Skyline software package, we demonstrated a statistically significant higher abundance of the C1R, LCN2, SLPI, FAM49B, TAGLN2, CFB, C3, C4B, LRG1, SERPINA1 candidate biomarkers in the saliva of OSCC patients. Furthermore, our study also demonstrated that CFB, C3, C4B, SERPINA1 and LRG1 are associated with the risk of developing OSCC. Overall, this study successfully used targeted proteomics to measure in saliva a panel of biomarker candidates for OSCC.

Indexed as

Amino Acid SequenceBiomarkers, TumorCarcinoma, Squamous CellFemaleHumansMaleMolecular Sequence DataMouthMouth NeoplasmsProteinsProteomicsSalivaBiomarkers, TumorProteinsBiomedicineOral cancerSalivaSelected reaction monitoringSkyline

Identifiers

PMID26552850
PMCPMC4703492
OpenAlexW2104708891

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.