ArticleBMC genomics2015
Transcriptome profiling of differentially expressed genes in floral buds and flowers of male sterile and fertile lines in watermelon.
Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed, 65 citations in OpenAlex.
- Identification of differentially expressed miRNAs between male sterile and fertile floral buds in watermelon (3 Biotech · 2024Article
- Comparative transcriptome analysis reveals the involvement of an MYB transcriptional activator,Frontiers in plant science · 2023Article
- Virus-induced gene silencing for in planta validation of gene function in cucurbits.Plant physiology · 2022Article
- NBLAST: a graphical user interface-based two-way BLAST software with a dot plot viewer.Genomics & informatics · 2022Article
- Disruption of the bHLH transcription factor Abnormal Tapetum 1 causes male sterility in watermelon.Horticulture research · 2021Article
- Global gene expression analysis of pigeonpea with male sterility conditioned by AThe plant genome · 2021Article
- Comparative transcriptome between male fertile and male sterile alfalfa (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- RNA Sequencing Reveals Rice Genes Involved in Male Reproductive Development under Temperature Alteration.Plants (Basel, Switzerland) · 2021Article
- Article
- Primary Cell Wall Modifying Proteins Regulate Wall Mechanics to Steer Plant Morphogenesis.Frontiers in plant science · 2021Review
- Mapping and Analysis of a Novel Genic Male Sterility Gene in Watermelon (Frontiers in plant science · 2021Article
- Analysis of differentially expressed genes and pathways associated with male sterility lines in watermelon via bulked segregant RNA-seq.3 Biotech · 2020Article
- Transcriptome profiling of differentially expressed genes in cytoplasmic male-sterile line and its fertility restorer line in pigeon pea (Cajanus cajan L.).BMC plant biology · 2020Article
- Article
- Current understanding of male sterility systems in vegetable Brassicas and their exploitation in hybrid breeding.Plant reproduction · 2019Review
- Comparative transcriptome analysis reveals new molecular pathways for cucumber genes related to sex determination.Plant reproduction · 2019Article
- An evolutionarily conserved non-synonymous SNP in a leucine-rich repeat domain determines anthracnose resistance in watermelon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Article
- iTRAQ-Based Proteomics Analyses of Sterile/Fertile Anthers from a Thermo-Sensitive Cytoplasmic Male-Sterile Wheat withInternational journal of molecular sciences · 2018Article
- Comparative analysis of the male inflorescence transcriptome profiles of an ms22 mutant of maize.PloS one · 2018Article
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundMale sterility is an important mechanism for the production of hybrid seeds in watermelon. Although fruit development has been studied extensively in watermelon, there are no reports on gene expression in floral organs. In this study, RNA-sequencing (RNA-seq) was performed in two near-isogenic watermelon lines (genic male sterile [GMS] line, DAH3615-MS and male fertile line, DAH3615) to identify the differentially expressed genes (DEGs) related to male sterility.
resultsDEG analysis showed that 1259 genes were significantly associated with male sterility at a FDR P-value of < 0.01. Most of these genes were only expressed in the male fertile line. In addition, 11 functional clusters were identified using DAVID functional classification analysis. Of detected genes in RNA-seq analysis, 19 were successfully validated by qRT-PCR.
conclusionsIn this study, we carried out a comprehensive floral transcriptome sequence comparison of a male fertile line and its near-isogenic male sterile line in watermelon. This analysis revealed essential genes responsible for stamen development, including pollen development and pollen tube elongation, and allowed their functional classification. These results provided new information on global mechanisms related to male sterility in watermelon.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.