Evidence map›Paper›PMID 26551685›Full record

ArticleThe Journal of clinical investigation2015

Histone demethylase JARID1C inactivation triggers genomic instability in sporadic renal cancer.

Beatrice Rondinelli, Dalia Rosano, Elena Antonini, Michela Frenquelli, Laura Montanini, DaChuan Huang, Simona Segalla, Kosuke Yoshihara, Samir B Amin, Dejan Lazarevic and 7 more

RetractedErratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Versatile JMJD proteins: juggling histones and much more.Trends in biochemical sciences · 2024
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Biological Sex As a Critical Variable in CD4Antioxidants & redox signaling · 2022
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 4 countries.

Beatrice Rondinelli
Dalia Rosano
Elena Antonini
Michela Frenquelli
Laura Montanini
DaChuan Huang
Simona Segalla
Kosuke Yoshihara
Samir B Amin
Dejan Lazarevic
Bin Tean The
Roel G W Verhaak
P Andrew Futreal
Luciano Di Croce
Lynda Chin
Davide Cittaro
Giovanni Tonon
The University of Texas MD Anderson Cancer Center · USNational Cancer Centre Singapore · SGVita-Salute San Raffaele University · ITCentre for Genomic Regulation · ES

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Kathrin Milbury · 1985 to 2026
$290.8M
6 · The paper itself

Abstract

Mutations in genes encoding chromatin-remodeling proteins are often identified in a variety of cancers. For example, the histone demethylase JARID1C is frequently inactivated in patients with clear cell renal cell carcinoma (ccRCC); however, it is largely unknown how JARID1C dysfunction promotes cancer. Here, we determined that JARID1C binds broadly to chromatin domains characterized by the trimethylation of lysine 9 (H3K9me3), which is a histone mark enriched in heterochromatin. Moreover, we found that JARID1C localizes on heterochromatin, is required for heterochromatin replication, and forms a complex with established players of heterochromatin assembly, including SUV39H1 and HP1α, as well as with proteins not previously associated with heterochromatin assembly, such as the cullin 4 (CUL4) complex adaptor protein DDB1. Transcription on heterochromatin is tightly suppressed to safeguard the genome, and in ccRCC cells, JARID1C inactivation led to the unrestrained expression of heterochromatic noncoding RNAs (ncRNAs) that in turn triggered genomic instability. Moreover, ccRCC patients harboring JARID1C mutations exhibited aberrant ncRNA expression and increased genomic rearrangements compared with ccRCC patients with tumors endowed with other genetic lesions. Together, these data suggest that inactivation of JARID1C in renal cancer leads to heterochromatin disruption, genomic rearrangement, and aggressive ccRCCs. Moreover, our results shed light on a mechanism that underlies genomic instability in sporadic cancers.

Indexed as

Genomic InstabilityAnimalsCarcinoma, Renal CellChromobox Protein Homolog 5DNA-Binding ProteinsHeLa CellsHeterochromatinHistone DemethylasesHistonesHumansKidney NeoplasmsMethylationMethyltransferasesMiceMutationNeoplasm ProteinsCBX5 protein, humanChromobox Protein Homolog 5DDB1 protein, humanDdb1 protein, mouseDNA-Binding ProteinsHeterochromatinHistone DemethylasesHistonesKDM5C protein, humanKdm5c protein, mouseMethyltransferasesNeoplasm ProteinsOxidoreductases, N-DemethylatingRepressor ProteinsSUV39H1 protein, humanSuv39h1 protein, mouse

Identifiers

PMID26551685
PMCPMC4665784
OpenAlexW2164082280

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.