Evidence map›Paper›PMID 26550947›Full record

ArticleVirology2016

Both RIG-I and MDA5 detect alphavirus replication in concentration-dependent mode.

Ivan Akhrymuk, Ilya Frolov, Elena I Frolova

Abstract read
In one paragraph

Article in Virology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 76 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ivan AkhrymukDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294-2170, USA.
Ilya FrolovDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294-2170, USA.
Elena I FrolovaDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294-2170, USA. Electronic address: evfrolova@UAB.edu.
University of Alabama at Birmingham · US

Funding

Alphavirus nsP3 protein: roles of intrinsically disordered region in virus replication and pathogenesisR01AI118867 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FROLOVA, ELENA I · 2015 to 2019
$1.8M
Mechanism of alphavirus packaging: designing of pseudoinfectious virusesR01AI095449 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FROLOV, ILYA V. · 2012 to 2016
$1.8M
The Molecular Basis of VEEV PathogenesisR01AI070207 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI FROLOV, ILYA V. · 2008 to 2012
$1.6M
Sindbis nonstructural protein nsP2: Interaction with cellular proteinsR01AI073301 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI FROLOVA, ELENA I · 2008 to 2012
$1.6M
NIAID NIH HHS AI070207NIAID NIH HHS AI073301NIAID NIH HHS AI095449NIAID NIH HHS AI118867NIAID NIH HHS R01 AI070207NIAID NIH HHS R01 AI073301NIAID NIH HHS R01 AI095449NIAID NIH HHS R01 AI118867
6 · The paper itself

Abstract

Alphaviruses are a family of positive-strand RNA viruses that circulate on all continents between mosquito vectors and vertebrate hosts. Despite a significant public health threat, their biology is not sufficiently investigated, and the mechanisms of alphavirus replication and virus-host interaction are insufficiently understood. In this study, we have applied a variety of experimental systems to further understand the mechanism by which infected cells detect replicating alphaviruses. Our new data strongly suggest that activation of the antiviral response by alphavirus-infected cells is determined by the integrity of viral genes encoding proteins with nuclear functions, and by the presence of two cellular pattern recognition receptors (PRRs), RIG-I and MDA5. No type I IFN response is induced in their absence. The presence of either of these PRRs is sufficient for detecting virus replication. However, type I IFN activation in response to pathogenic alphaviruses depends on the basal levels of RIG-I or MDA5.

Indexed as

3T3 CellsAlphavirusAnimalsCell LineCricetinaeDEAD Box Protein 58DEAD-box RNA HelicasesGene Knockdown TechniquesGene Knock-In TechniquesImmunity, InnateInterferon-betaInterferon-Induced Helicase, IFIH1MiceReceptors, Pattern RecognitionVirus ReplicationDdx58 protein, mouseDEAD Box Protein 58DEAD-box RNA HelicasesIfih1 protein, mouseInterferon-betaInterferon-Induced Helicase, IFIH1Receptors, Pattern RecognitionAlphavirusesInnate immunityMDA5Pattern recognition receptorsRIG-IType I interferonVirus–host interactions

Identifiers

PMID26550947
PMCPMC4721224
OpenAlexW2191075961

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.