Evidence map›Paper›PMID 26550774›Full record

ArticleNature methods2016

Multiscale photoacoustic tomography using reversibly switchable bacterial phytochrome as a near-infrared photochromic probe.

Junjie Yao, Andrii A Kaberniuk, Lei Li, Daria M Shcherbakova, Ruiying Zhang, Lidai Wang, Guo Li, Vladislav V Verkhusha, Lihong V Wang

Abstract read
In one paragraph

Article in Nature methods, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 139 papers.

0numbers the graph read from it
0cells of the map it votes in
139citing papers in PubMed
16.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

139 citing papers in PubMed, 267 citations in OpenAlex.

  1. Article
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  12. Article
  13. Sensors (Basel, Switzerland) · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Emerging Photoacoustic Imaging Techniques for Peripheral Arterial Disease.Current treatment options in cardiovascular medicine · 2025
    Review
  18. Article
  19. Sound Out the Deep Clarity: Super-Resolution Photoacoustic Imaging at Depths.IEEE transactions on ultrasonics, ferroelectrics, and frequency control · 2024
    Review
  20. Article

79 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Junjie YaoDepartment of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri, USA.
Andrii A KaberniukDepartment of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, New York, USA.
Lei LiDepartment of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri, USA.
Daria M ShcherbakovaDepartment of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, New York, USA.
Ruiying ZhangDepartment of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri, USA.
Lidai WangDepartment of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri, USA.
Guo LiDepartment of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri, USA.
Vladislav V VerkhushaDepartment of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, New York, USA.
Lihong V WangDepartment of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri, USA.
Washington University in St. Louis · USAlbert Einstein College of Medicine · US

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
Washington University Center for Translational NeuroscienceP30NS057105 · NINDS · WASHINGTON UNIVERSITY · PI HOLTZMAN, DAVID M. · 2006 to 2011
$8.7M
PHOTON TUNNELING: SHEDDING NEW LIGHT ON BIOMEDICINEDP1EB016986 · NIBIB · WASHINGTON UNIVERSITY · PI WANG, LIHONG · 2012 to 2016
$3.8M
In Vivo Multiphoton Based Imaging of Complex Cancer Cell BehaviorR01CA164468 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI VERKHUSHA, VLADISLAV · 2011 to 2015
$3.8M
IN VIVO IMAGING OF SINGLE CIRCULATING CELLSR01CA186567 · NCI · WASHINGTON UNIVERSITY · PI WANG, LIHONG · 2013 to 2017
$3.6M
FAST HIGH-RESOLUTION DEEP PHOTOACOUSTIC TOMOGRAPHY OF ACTION POTENTIALS IN BRAINSU01NS090579 · NINDS · WASHINGTON UNIVERSITY · PI WANG, LIHONG · 2014 to 2016
$2.7M
WHOLE-BODY SMALL-ANIMAL PHOTOACOUSTIC-ULTRASONIC COMPUTED TOMOGRAPHYR01EB016963 · NIBIB · WASHINGTON UNIVERSITY · PI ANASTASIO, MARK A · 2013 to 2016
$2.4M
Molecular Fluorescent ToolkitR01GM073913 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI VERKHUSHA, VLADISLAV · 2006 to 2014
$2.4M
Imaging Transcription in Living AnimalsR01EB013571 · NIBIB · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI SINGER, ROBERT H · 2012 to 2015
$2.4M
Engineering bacterial phytochromes for near-infrared imaging in mammalsR01GM108579 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI VERKHUSHA, VLADISLAV · 2014 to 2017
$1.3M
HIGH-FREQUENCY ULTRASONIC AND PHOTOACOUSTIC IMAGING SYSTEMS10RR026922 · NCRR · WASHINGTON UNIVERSITY · PI WANG, LIHONG · 2011 to 2011
$599k
NCCDPHP CDC HHS DP1 EB016986NCI NIH HHS CA164468NCI NIH HHS P30 CA013330NCI NIH HHS R01 CA164468NCI NIH HHS R01 CA186567NCRR NIH HHS S10 RR026922NIBIB NIH HHS DP1 EB016986NIBIB NIH HHS R01 EB013571NIBIB NIH HHS R01 EB016963NIGMS NIH HHS GM073913NIGMS NIH HHS GM108579NIGMS NIH HHS R01 GM073913NIGMS NIH HHS R01 GM108579NINDS NIH HHS NS057105NINDS NIH HHS P30 NS057105NINDS NIH HHS U01 NS090579
6 · The paper itself

Abstract

Photoacoustic tomography (PAT) of genetically encoded probes allows for imaging of targeted biological processes deep in tissues with high spatial resolution; however, high background signals from blood can limit the achievable detection sensitivity. Here we describe a reversibly switchable nonfluorescent bacterial phytochrome for use in multiscale photoacoustic imaging, BphP1, with the most red-shifted absorption among genetically encoded probes. BphP1 binds a heme-derived biliverdin chromophore and is reversibly photoconvertible between red and near-infrared light-absorption states. We combined single-wavelength PAT with efficient BphP1 photoswitching, which enabled differential imaging with substantially decreased background signals, enhanced detection sensitivity, increased penetration depth and improved spatial resolution. We monitored tumor growth and metastasis with ∼ 100-μm resolution at depths approaching 10 mm using photoacoustic computed tomography, and we imaged individual cancer cells with a suboptical-diffraction resolution of ∼ 140 nm using photoacoustic microscopy. This technology is promising for biomedical studies at several scales.

Indexed as

AcousticsAnimalsCell Line, TumorHumansMicePhytochromeTomographyPhytochrome

Identifiers

PMID26550774
PMCPMC4697872
OpenAlexW2195567999

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.