Evidence map›Paper›PMID 26549411›Full record

ArticleHuman mutation2016

Mechanisms for the Generation of Two Quadruplications Associated with Split-Hand Malformation.

Shen Gu, Jennifer E Posey, Bo Yuan, Claudia M B Carvalho, H M Luk, Kelly Erikson, Ivan F M Lo, Gordon K C Leung, Curtis R Pickering, Brian H Y Chung and 1 more

Abstract readCase Reports
In one paragraph

Article in Human mutation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Shen GuDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, 77030.
Jennifer E PoseyDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, 77030.
Bo YuanDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, 77030.
Claudia M B CarvalhoDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, 77030.
H M LukClinical Genetic Service, Department of Health, Hong Kong, China.
Kelly EriksonDepartment of Head and Neck Surgery, The University of Texas MD Anderson Cancer Center, Houston, Texas, 77030.
Ivan F M LoClinical Genetic Service, Department of Health, Hong Kong, China.
Gordon K C LeungDepartment of Obstetrics & Gynaecology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China.
Curtis R PickeringDepartment of Head and Neck Surgery, The University of Texas MD Anderson Cancer Center, Houston, Texas, 77030.
Brian H Y ChungDepartment of Obstetrics & Gynaecology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China.
James R LupskiDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, 77030.
Baylor College of Medicine · USDepartment of Health · CNThe University of Texas MD Anderson Cancer Center · USChinese University of Hong Kong · CNQueen Mary Hospital · CN

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
MEDICAL GENETICS RESEARCH FELLOWSHIP PROGRAMT32GM007526 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Brendan Lee · 1985 to 2026
$11.4M
Nonrecurrent rearrangements, genome architecture and neurodegenerative disease.R01NS058529 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2009 to 2017
$5.0M
MUTATIONAL SIGNATURE(S) OF HUMAN GENOMIC REARRANGEMENT MECHANISMSR01GM106373 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI HASTINGS, PHILIP JOHN, LUPSKI, JAMES R. · 2014 to 2022
$3.1M
NHGRI NIH HHS U54 HG006542NIGMS NIH HHS R01 GM106373NIGMS NIH HHS R01GM106373NIGMS NIH HHS T32 GM007526NIGMS NIH HHS T32 GM07526NINDS NIH HHS R01 NS058529NINDS NIH HHS R01NS058529
6 · The paper itself

Abstract

Germline copy-number variants (CNVs) involving quadruplications are rare and the mechanisms generating them are largely unknown. Previously, we reported a 20-week gestation fetus with split-hand malformation; clinical microarray detected two maternally inherited triplications separated by a copy-number neutral region at 17p13.3, involving BHLHA9 and part of YWHAE. Here, we describe an 18-month-old male sibling of the previously described fetus with split-hand malformation. Custom high-density microarray and digital droplet PCR revealed the copy-number gains were actually quadruplications in the mother, the fetus, and her later born son. This quadruplication-normal-quadruplication pattern was shown to be expanded from the triplication-normal-triplication CNV at the same loci in the maternal grandmother. We mapped two breakpoint junctions and demonstrated that both are mediated by Alu repetitive elements and identical in these four individuals. We propose a three-step process combining Alu-mediated replicative-repair-based mechanism(s) and intergenerational, intrachromosomal nonallelic homologous recombination to generate the quadruplications in this family.

Indexed as

Chromosome DuplicationChromosomes, Human, Pair 17DNA Copy Number VariationsGenome, Human14-3-3 ProteinsAdultAgedAlu ElementsBase SequenceBasic Helix-Loop-Helix ProteinsFemaleGenetic LociHand Deformities, CongenitalHumansInfantMale14-3-3 ProteinsBasic Helix-Loop-Helix ProteinsBHLHA9 protein, humanYWHAE protein, humanAlu repetitive elementscomplex genomic rearrangementdigital droplet PCRquadruplicationsplit-hand malformation

Identifiers

PMID26549411
PMCPMC4718869
OpenAlexW2110746951

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.