Evidence map›Paper›PMID 26549191›Full record

ArticleProtein science : a publication of the Protein Society2016

Rational design of a monomeric and photostable far-red fluorescent protein for fluorescence imaging in vivo.

Dan Yu, Zhiqiang Dong, William Clay Gustafson, Rubén Ruiz-González, Luca Signor, Fanny Marzocca, Franck Borel, Matthew P Klassen, Kalpana Makhijani, Antoine Royant and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

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  3. Phase separation of YAP-MAML2 differentially regulates the transcriptome.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  14. Review
  15. A Bright Future for Fluorescence Imaging of Fungi in Living Hosts.Journal of fungi (Basel, Switzerland) · 2019
    Review
  16. Article
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  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 9 institutions in 4 countries.

Dan YuDepartment of Pharmaceutical Chemistry, Cardiovascular Research Institute, University of California - San Francisco, San Francisco, California.
Zhiqiang DongDepartment of Bioengineering and Therapeutic Science, Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, Institute of Human Genetics, University of California, San Francisco, California.
William Clay GustafsonDepartment of Pediatrics, Departments of Neurology and Neurological Surgery, University of California - San Francisco, San Francisco, California.
Rubén Ruiz-GonzálezInstitut Químic De Sarrià, Universitat Ramon Llull, via Augusta 390, Barcelona, 08017, Spain.
Luca SignorInstitut De Biologie Structurale (IBS), University of Grenoble Alpes, CNRS, CEA, Grenoble, F-38044, France.
Fanny MarzoccaInstitut De Biologie Structurale (IBS), University of Grenoble Alpes, CNRS, CEA, Grenoble, F-38044, France.
Franck BorelInstitut De Biologie Structurale (IBS), University of Grenoble Alpes, CNRS, CEA, Grenoble, F-38044, France.
Matthew P KlassenHoward Hughes Medical Institute, Department of Physiology, University of California - San Francisco, San Francisco, California.
Kalpana MakhijaniDepartment of Pharmaceutical Chemistry, Cardiovascular Research Institute, University of California - San Francisco, San Francisco, California.
Antoine RoyantInstitut De Biologie Structurale (IBS), University of Grenoble Alpes, CNRS, CEA, Grenoble, F-38044, France.
Yuh-Nung JanHoward Hughes Medical Institute, Department of Physiology, University of California - San Francisco, San Francisco, California.
William A WeissDepartment of Pediatrics, Departments of Neurology and Neurological Surgery, University of California - San Francisco, San Francisco, California.
Su GuoDepartment of Bioengineering and Therapeutic Science, Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, Institute of Human Genetics, University of California, San Francisco, California.
Xiaokun ShuDepartment of Pharmaceutical Chemistry, Cardiovascular Research Institute, University of California - San Francisco, San Francisco, California.
University of California, San Francisco · USUniversité Grenoble Alpes · FRBroad Center · USCentre National de la Recherche Scientifique · FRHoward Hughes Medical Institute · USInstitut de Biologie Structurale · FRInstitut Químic de Sarrià · ESNeurological Surgery · USUCSF Helen Diller Family Comprehensive Cancer Center · US

Funding

The vascular niche in glioma propagation and resistance to therapyU54CA163155 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BERGERS, GABRIELE, WEAVER, VALERIE MARIE · 2011 to 2015
$4.4M
Asymmetric Cell Division in Vertebrate Brain DevelopmentR01NS095734 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GUO, SU · 2015 to 2019
$1.7M
Rational design of a genetically encoded infrared fluorescent protease reporterR01GM115399 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHU, XIAOKUN · 2015 to 2018
$1.3M
Blockade of p53 and Aurora A in Therapy Resistant NeuroblastomaK08NS079485 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GUSTAFSON, WILLIAM CLAY · 2012 to 2014
$552k
Howard Hughes Medical InstituteNCI NIH HHS U54 CA163155NCI NIH HHS U54CA163155NIGMS NIH HHS GM115399NIGMS NIH HHS R01 GM115399NINDS NIH HHS K08 NS079485NINDS NIH HHS K08NS079485NINDS NIH HHS NS095734NINDS NIH HHS R01 NS095734
6 · The paper itself

Abstract

Fluorescent proteins (FPs) are powerful tools for cell and molecular biology. Here based on structural analysis, a blue-shifted mutant of a recently engineered monomeric infrared fluorescent protein (mIFP) has been rationally designed. This variant, named iBlueberry, bears a single mutation that shifts both excitation and emission spectra by approximately 40 nm. Furthermore, iBlueberry is four times more photostable than mIFP, rendering it more advantageous for imaging protein dynamics. By tagging iBlueberry to centrin, it has been demonstrated that the fusion protein labels the centrosome in the developing zebrafish embryo. Together with GFP-labeled nucleus and tdTomato-labeled plasma membrane, time-lapse imaging to visualize the dynamics of centrosomes in radial glia neural progenitors in the intact zebrafish brain has been demonstrated. It is further shown that iBlueberry can be used together with mIFP in two-color protein labeling in living cells and in two-color tumor labeling in mice.

Indexed as

AnimalsCell Line, TumorDrosophilaFemaleFluorescent DyesHEK293 CellsHumansLuminescent ProteinsMiceMice, Inbred BALB CModels, MolecularMutagenesis, Site-DirectedMutationNeoplasmsOptical ImagingPhotobleachingFluorescent DyesLuminescent ProteinsRed Fluorescent Proteinbacterial phytochromefluorescence imagingfluorescent proteinsrational design

Identifiers

PMID26549191
PMCPMC4815332
OpenAlexW2116775104

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.