Evidence map›Paper›PMID 26547394›Full record

ArticleMolecular ecology2016

Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster.

Alan O Bergland, Ray Tobler, Josefa González, Paul Schmidt, Dmitri Petrov

Abstract read
In one paragraph

Article in Molecular ecology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Genomic investigations of successful invasions: the picture emerging from recent studies.Biological reviews of the Cambridge Philosophical Society · 2025
    Pooled it
  2. Article
  3. Early life-stage thermal resilience is determined by climate-linked regulatory variation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Environment and diet shape the geography-specificApplied and environmental microbiology · 2025
    Article
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  8. Evolution letters · 2025
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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Alan O BerglandDepartment of Biology, Stanford University, Stanford, CA, 94305-5020, USA.
Ray ToblerDepartment of Biology, Stanford University, Stanford, CA, 94305-5020, USA.
Josefa GonzálezDepartment of Biology, Stanford University, Stanford, CA, 94305-5020, USA.
Paul SchmidtDepartment of Biology, The University of Pennsylvania, Philadelphia, PA, 19104, USA.
Dmitri PetrovDepartment of Biology, Stanford University, Stanford, CA, 94305-5020, USA.

Funding

Genomics of rapid adaptation on seasonal timescales in D. melanogasterR01GM100366 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI SCHMIDT, PAUL · 2012 to 2019
$3.3M
Population Genomics of Adaptive Transposition in DrosophilaR01GM089926 · NIGMS · STANFORD UNIVERSITY · PI PETROV, DMITRI · 2010 to 2013
$969k
Genomics of natural populationsF32GM097837 · NIGMS · STANFORD UNIVERSITY · PI BERGLAND, ALAN OLAV · 2011 to 2013
$148k
Austrian Science Fund FWF W 1225NIGMS NIH HHS F32 GM097837NIGMS NIH HHS R01 GM089926NIGMS NIH HHS R01GM089926NIGMS NIH HHS R01 GM100366
6 · The paper itself

Abstract

Populations arrayed along broad latitudinal gradients often show patterns of clinal variation in phenotype and genotype. Such population differentiation can be generated and maintained by both historical demographic events and local adaptation. These evolutionary forces are not mutually exclusive and can in some cases produce nearly identical patterns of genetic differentiation among populations. Here, we investigate the evolutionary forces that generated and maintain clinal variation genome-wide among populations of Drosophila melanogaster sampled in North America and Australia. We contrast patterns of clinal variation in these continents with patterns of differentiation among ancestral European and African populations. Using established and novel methods we derive here, we show that recently derived North America and Australia populations were likely founded by both European and African lineages and that this hybridization event likely contributed to genome-wide patterns of parallel clinal variation between continents. The pervasive effects of admixture mean that differentiation at only several hundred loci can be attributed to the operation of spatially varying selection using an FST outlier approach. Our results provide novel insight into the well-studied system of clinal differentiation in D. melanogaster and provide a context for future studies seeking to identify loci contributing to local adaptation in a wide variety of organisms, including other invasive species as well as temperate endemics.

Indexed as

Evolution, MolecularGenetics, PopulationAdaptation, PhysiologicalAnimalsAustraliaDrosophila melanogasterGene FrequencyGenome, InsectNorth AmericaPolymorphism, Single NucleotideadaptationDrosophila melanogasterlatitudinal clinesparallelismsecondary contact

Identifiers

PMID26547394
PMCPMC5089930

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.