Evidence map›Paper›PMID 26547230›Full record

ArticleTuberculosis (Edinburgh, Scotland)2015

Comparison of transposon and deletion mutants in Mycobacterium tuberculosis: The case of rv1248c, encoding 2-hydroxy-3-oxoadipate synthase.

Christina Maksymiuk, Thomas Ioerger, Anand Balakrishnan, Ruslana Bryk, Kyu Rhee, James Sacchettini, Carl Nathan

Abstract readComparative Study
In one paragraph

Article in Tuberculosis (Edinburgh, Scotland), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. The PDIM paradox ofbioRxiv : the preprint server for biology · 2023
    Article
  3. AMicroorganisms · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Christina MaksymiukDepartment of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065, USA.
Thomas IoergerDepartment of Computer Science and Engineering, Texas A&M University, USA.
Anand BalakrishnanDepartment of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065, USA.
Ruslana BrykDepartment of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065, USA.
Kyu RheeDepartment of Medicine, Weill Cornell Medical College, New York, NY 10065, USA.
James SacchettiniDepartment of Biochemistry and Biophysics, Texas A&M University, USA.
Carl NathanDepartment of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065, USA. Electronic address: cnathan@med.cornell.edu.

Funding

Targets in Mycobacterium Tuberculosis: Stress Resistance & RepairR01AI064768 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI NATHAN, CARL FRANCIS · 2005 to 2015
$8.6M
NIAID NIH HHS R01 AI064768
6 · The paper itself

Abstract

We compared phenotypes of five strains of Mycobacterium tuberculosis (Mtb) differing in their expression of rv1248c and its product, 2-hydroxy-3-oxoadipate synthase (HOAS), with a focus on carbon source-dependent growth rates and attenuation in mice. Surprisingly, an rv1248c transposon mutant on a CDC1551 background grew differently than an rv1248c deletion mutant on the same background. Moreover, the same rv1248c deletion in two different yet genetically similar strain backgrounds (CDC1551 and H37Rv) gave different phenotypes, though each could be complemented. Whole genome re-sequencing did not provide an obvious explanation for these discrepancies. These observations offer a cautionary lesson about the strength of inference from complementation and sequence analysis, and commend consideration of more complex phenomena than usually contemplated in Mtb, such as epigenetic control.

Indexed as

DNA Transposable ElementsSequence DeletionAldehyde-Ketone TransferasesAnimalsBacterial LoadBacterial ProteinsDisease Models, AnimalGenotypeMice, Inbred C57BLMycobacterium tuberculosisPhenotypeTime FactorsTuberculosis, Pulmonary2-hydroxy-3-oxoadipate synthaseAldehyde-Ketone TransferasesBacterial ProteinsDNA Transposable ElementsCDC1551Genetic complementationHyroxyoxoadipate synthaseTransposon mutagenesisWhole genome sequencing

Identifiers

PMID26547230
PMCPMC4667687

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.