Evidence map›Paper›PMID 26545810›Full record

ArticleGenes & development2015

CALML5 is a ZNF750- and TINCR-induced protein that binds stratifin to regulate epidermal differentiation.

Bryan K Sun, Lisa D Boxer, Julia D Ransohoff, Zurab Siprashvili, Kun Qu, Vanessa Lopez-Pajares, S Tyler Hollmig, Paul A Khavari

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 1 synthesis or guideline pooled it, 78 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Epidermal Immunity and Function: Origin in Neonatal Skin.Frontiers in molecular biosciences · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Bryan K SunProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, California 94305, USA;
Lisa D BoxerProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, California 94305, USA; Department of Biology, Stanford University, Stanford, California 94305, USA;
Julia D RansohoffProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, California 94305, USA;
Zurab SiprashviliProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, California 94305, USA;
Kun QuProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, California 94305, USA;
Vanessa Lopez-PajaresProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, California 94305, USA;
S Tyler HollmigProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, California 94305, USA;
Paul A KhavariProgram in Epithelial Biology, Stanford University School of Medicine, Stanford, California 94305, USA; Veterans Affairs Healthcare System, Palo Alto, California 94304, USA.
Stanford University · US

Funding

REGULATORS OF EPIDERMAL GENE EXPRESSIONR01AR045192 · NIAMS · STANFORD UNIVERSITY · PI PAUL KHAVARI · 1999 to 2026
$9.9M
Secreted Regulators of Epidermal HomeostasisK08AR067853 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUN, BRYAN · 2016 to 2020
$908k
Role of Noncoding RNAs in Epidermal DifferentiationF32AR063508 · NIAMS · STANFORD UNIVERSITY · PI SUN, BRYAN · 2012 to 2015
$177k
NIAMS NIH HHS F32 AR063508NIAMS NIH HHS K08 AR067853NIAMS NIH HHS R01 AR045192NIAMS NIH HHS R01 AR45192
6 · The paper itself

Abstract

Outward migration of epidermal progenitors occurs with induction of hundreds of differentiation genes, but the identities of all regulators required for this process are unknown. We used laser capture microdissection followed by RNA sequencing to identify calmodulin-like 5 (CALML5) as the most enriched gene in differentiating outer epidermis. CALML5 mRNA was up-regulated by the ZNF750 transcription factor and then stabilized by the long noncoding RNA TINCR. CALML5 knockout impaired differentiation, abolished keratohyalin granules, and disrupted epidermal barrier function. Mass spectrometry identified SFN (stratifin/14-3-3σ) as a CALML5-binding protein. CALML5 interacts with SFN in suprabasal epidermis, cocontrols 13% of late differentiation genes, and modulates interaction of SFN to some of its binding partners. A ZNF750-TINCR-CALML5-SFN network is thus essential for epidermal differentiation.

Indexed as

Epidermal Cells14-3-3 ProteinsAdaptor Proteins, Signal TransducingBiomarkers, TumorCalcium-Binding ProteinsCell DifferentiationExoribonucleasesGene Expression Regulation, DevelopmentalPhosphoproteinsProtein BindingProtein TransportRNA, UntranslatedStem CellsTranscription FactorsTumor Suppressor ProteinsYAP-Signaling Proteins14-3-3 ProteinsAdaptor Proteins, Signal TransducingBiomarkers, TumorCalcium-Binding ProteinsCALML5 protein, humanExoribonucleasesPhosphoproteinsRNA, UntranslatedSFN protein, humanTranscription FactorsTumor Suppressor ProteinsYAP1 protein, humanYAP-Signaling ProteinsZNF750 protein, humandifferentiationepidermistranscription

Identifiers

PMID26545810
PMCPMC4647556
OpenAlexW2264071891

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.