Evidence map›Paper›PMID 26543264›Full record

ArticleIndian journal of microbiology2015

Phylogenetic Profiling and Diversity of Bacterial Communities in the Death Valley, an Extreme Habitat in the Atacama Desert.

Francine Piubeli, María de Lourdes Moreno, Luciano Takeshi Kishi, Flavio Henrique-Silva, María Teresa García, Encarnación Mellado

Abstract read
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Article in Indian journal of microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Francine PiubeliDepartment of Genetics and Evolution (DGE), UFSCar, Via Washington Luis, Km. 235, São Carlos, SP Brazil ; Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, C/Profesor García González, 2, 41012 Seville, Spain.
María de Lourdes MorenoDepartment of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, C/Profesor García González, 2, 41012 Seville, Spain.
Luciano Takeshi KishiDepartment of Genetics and Evolution (DGE), UFSCar, Via Washington Luis, Km. 235, São Carlos, SP Brazil.
Flavio Henrique-SilvaDepartment of Genetics and Evolution (DGE), UFSCar, Via Washington Luis, Km. 235, São Carlos, SP Brazil.
María Teresa GarcíaDepartment of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, C/Profesor García González, 2, 41012 Seville, Spain.
Encarnación MelladoDepartment of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, C/Profesor García González, 2, 41012 Seville, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Atacama Desert, one of the driest deserts in the world, represents a unique extreme environmental ecosystem to explore the bacterial diversity as it is considered to be at the dry limit for life. A 16S rRNA gene (spanning the hyper variable V3 region) library was constructed from an alkaline sample of unvegetated soil at the hyperarid margin in the Atacama Desert. A total of 244 clone sequences were used for MOTHUR analysis, which revealed 20 unique phylotypes or operational taxonomic units (OTUs). V3 region amplicons of the 16S rRNA were suitable for distinguishing the bacterial community to the genus and specie level. We found that all OTUs were affiliated with taxa representative of the Firmicutes phylum. The extremely high abundance of Firmicutes indicated that most bacteria in the soil were spore-forming survivors. In this study we detected a narrower diversity as compared to other ecological studies performed in other areas of the Atacama Desert. The reported genera were Oceanobacillus (representing the 69.5 % of the clones sequenced), Bacillus, Thalassobacillus and Virgibacillus. The present work shows physical and chemical parameters have a prominent impact on the microbial community structure. It constitutes an example of the communities adapted to live in extreme conditions caused by dryness and metal concentrations .

Indexed as

16S rDNAAtacama DesertBacteriaExtreme habitatExtremophiles

Identifiers

PMID26543264
PMCPMC4627947

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.