Evidence map›Paper›PMID 26543161›Full record

ArticleGenes & development2015

Structural basis for substrate recognition by the human N-terminal methyltransferase 1.

Cheng Dong, Yunfei Mao, Wolfram Tempel, Su Qin, Li Li, Peter Loppnau, Rong Huang, Jinrong Min

Abstract read
In one paragraph

Article in Genes & development, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Structural basis of tRNA recognition by the mNature structural & molecular biology · 2024
    Article
  5. Review
  6. Article
  7. Impact of Protein NLife (Basel, Switzerland) · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Methyltransferases: Functions and Applications.Chembiochem : a European journal of chemical biology · 2022
    Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Post-translational Modifications of the Protein Termini.Frontiers in cell and developmental biology · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Cheng DongStructural Genomics Consortium, University of Toronto, Toronto, Ontaria M5G 1L7, Canada;
Yunfei MaoDepartment of Medicinal Chemistry, Drug Discovery and Development, Virginia Commonwealth University, Richmond, Virginia 23219, USA; The Institute for Structural Biology, Drug Discovery and Development, Virginia Commonwealth University, Richmond, Virginia 23219, USA;
Wolfram TempelStructural Genomics Consortium, University of Toronto, Toronto, Ontaria M5G 1L7, Canada;
Su QinStructural Genomics Consortium, University of Toronto, Toronto, Ontaria M5G 1L7, Canada;
Li LiStructural Genomics Consortium, University of Toronto, Toronto, Ontaria M5G 1L7, Canada;
Peter LoppnauStructural Genomics Consortium, University of Toronto, Toronto, Ontaria M5G 1L7, Canada;
Rong HuangDepartment of Medicinal Chemistry, Drug Discovery and Development, Virginia Commonwealth University, Richmond, Virginia 23219, USA; The Institute for Structural Biology, Drug Discovery and Development, Virginia Commonwealth University, Richmond, Virginia 23219, USA;
Jinrong MinStructural Genomics Consortium, University of Toronto, Toronto, Ontaria M5G 1L7, Canada; Department of Physiology, University of Toronto, Toronto, Ontario M5S 1A8, Canada.

Funding

Wellcome Trust
6 · The paper itself

Abstract

α-N-terminal methylation represents a highly conserved and prevalent post-translational modification, yet its biological function has remained largely speculative. The recent discovery of α-N-terminal methyltransferase 1 (NTMT1) and its physiological substrates propels the elucidation of a general role of α-N-terminal methylation in mediating DNA-binding ability of the modified proteins. The phenotypes, observed from both NTMT1 knockdown in breast cancer cell lines and knockout mouse models, suggest the potential involvement of α-N-terminal methylation in DNA damage response and cancer development. In this study, we report the first crystal structures of human NTMT1 in complex with cofactor S-adenosyl-L-homocysteine (SAH) and six substrate peptides, respectively, and reveal that NTMT1 contains two characteristic structural elements (a β hairpin and an N-terminal extension) that contribute to its substrate specificity. Our complex structures, coupled with mutagenesis, binding, and enzymatic studies, also present the key elements involved in locking the consensus substrate motif XPK (X indicates any residue type other than D/E) into the catalytic pocket for α-N-terminal methylation and explain why NTMT1 prefers an XPK sequence motif. We propose a catalytic mechanism for α-N-terminal methylation. Overall, this study gives us the first glimpse of the molecular mechanism of α-N-terminal methylation and potentially contributes to the advent of therapeutic agents for human diseases associated with deregulated α-N-terminal methylation.

Indexed as

Models, MolecularAmino Acid MotifsAnimalsCell Line, TumorCrystallizationEnzyme ActivationGene Knockdown TechniquesMethylationMethyltransferasesMutationProtein BindingProtein Structure, TertiaryRecombinant ProteinsS-AdenosylhomocysteineMethyltransferasesNTMT1 protein, humanRecombinant ProteinsS-Adenosylhomocysteinecrystal structuremethyltransferaseNTMT1α-N-terminal methylation

Identifiers

PMID26543161
PMCPMC4691889

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.