ArticleBMC genomics2015
Genome-wide identification and characterization of auxin response factor (ARF) family genes related to flower and fruit development in papaya (Carica papaya L.).
Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.
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53 citing papers in PubMed, 98 citations in OpenAlex.
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- Functional Divergence of the Closely Related Genes PhARF5 and PhARF19a inInternational journal of molecular sciences · 2024Article
- Exploring Genomic Regions Associated with Fruit Traits in Pepper: Insights from Multiple GWAS Models.International journal of molecular sciences · 2024Article
- Auxin response factors: important keys for understanding regulatory mechanisms of fleshy fruit development and ripening.Horticulture research · 2024Article
- De novo transcriptome profiling reveals the patterns of gene expression in plum fruits with bud mutations.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Genome-Wide Identification and Characterization of Tomato Fatty Acid β-Oxidase Family GenesInternational journal of molecular sciences · 2024Article
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- Differential expression of microRNAs in response toFrontiers in plant science · 2024Article
- Genome mining of WOX-ARF gene linkage inFrontiers in plant science · 2024Article
- Identification and Evolutionary Analysis of the Auxin Response Factor (ARF) Family Based on Transcriptome Data from Caucasian Clover and Analysis of Expression Responses to Hormones.International journal of molecular sciences · 2023Article
- Molecular mapping of genomic regions and identification of possible candidate genes associated with gynoecious sex expression in bitter gourd.Frontiers in plant science · 2023Article
- Genome-Wide Identification and Characterization of Auxin Response Factor (ARF) Gene Family Involved in Wood Formation and Response to Exogenous Hormone Treatment inInternational journal of molecular sciences · 2023Article
- The interaction between exogenous IBA with sucrose, light and ventilation alters the expression of ARFs and Aux/IAA genes in Carica papaya plantlets.Plant molecular biology · 2022Article
- Genome-Wide Identification and Functional Characterization of Auxin Response Factor (ARF) Genes in Eggplant.International journal of molecular sciences · 2022Article
- Genome-Wide Characterization, Evolutionary Analysis ofPlants (Basel, Switzerland) · 2022Article
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Authors and funding
7 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundAuxin and auxin signaling are involved in a series of developmental processes in plants. Auxin Response Factors (ARFs) is reported to modulate the expression of target genes by binding to auxin response elements (AuxREs) and influence the transcriptional activation of down-stream target genes. However, how ARF genes function in flower development and fruit ripening of papaya (Carica papaya L.) is largely unknown. In this study, a comprehensive characterization and expression profiling analysis of 11 C. papaya ARF (CpARF) genes was performed using the newly updated papaya reference genome data.
resultsWe analyzed CpARF expression patterns at different developmental stages. CpARF1, CpARF2, CpARF4, CpARF5, and CpARF10 showed the highest expression at the initial stage of flower development, but decreased during the following developmental stages. CpARF6 expression increased during the developmental process and reached its peak level at the final stage of flower development. The expression of CpARF1 increased significantly during the fruit ripening stages. Many AuxREs were included in the promoters of two ethylene signaling genes (CpETR1 and CpETR2) and three ethylene-synthesis-related genes (CpACS1, CpACS2, and CpACO1), suggesting that CpARFs might be involved in fruit ripening via the regulation of ethylene signaling.
conclusionsOur study provided comprehensive information on ARF family in papaya, including gene structures, chromosome locations, phylogenetic relationships, and expression patterns. The involvement of CpARF gene expression changes in flower and fruit development allowed us to understand the role of ARF-mediated auxin signaling in the maturation of reproductive organs in papaya.
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