ArticleJournal of the Royal Society, Interface2015
Modelling stripe formation in zebrafish: an agent-based approach.
Article in Journal of the Royal Society, Interface, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed.
- Color patterns as a model for connecting developmental mechanisms to phenotypic evolution.Nature communications · 2026Review
- Pattern Formation in Agent-Based and PDE Models for Evolutionary Games with Payoff-Driven Motion.Bulletin of mathematical biology · 2026Article
- Chase-and-Run and Chirality in Nonlocal Models of Pattern Formation.Bulletin of mathematical biology · 2025Article
- Inference and prediction for stochastic models of biological populations undergoing migration and proliferation.Journal of the Royal Society, Interface · 2025Review
- A new paradigm considering multicellular adhesion, repulsion and attraction represent diverse cellular tile patterns.PLoS computational biology · 2025Article
- Linking discrete and continuous models of cell birth and migration.Royal Society open science · 2024Article
- Discrete and continuous mathematical models of sharp-fronted collective cell migration and invasion.Royal Society open science · 2024Article
- Article
- Zigzag persistence for coral reef resilience using a stochastic spatial model.Journal of the Royal Society, Interface · 2023Article
- A subcellular biochemical model for T6SS dynamics reveals winning competitive strategies.PNAS nexus · 2023Article
- Review
- Article
- Studies of Turing pattern formation in zebrafish skin.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2021Review
- Pigment pattern morphospace of Danio fishes: evolutionary diversification and mutational effects.Biology open · 2021Article
- A comprehensive survey of developmental programs reveals a dearth of tree-like lineage graphs and ubiquitous regeneration.BMC biology · 2021Article
- Influence of survival, promotion, and growth on pattern formation in zebrafish skin.Scientific reports · 2021Article
- Topological data analysis of collective and individual epithelial cells using persistent homology of loops.Soft matter · 2021Article
- Reaction-diffusion in a growing 3D domain of skin scales generates a discrete cellular automaton.Nature communications · 2021Article
- A complex genetic architecture in zebrafish relatives Danio quagga and D. kyathit underlies development of stripes and spots.PLoS genetics · 2021Article
- Phase Transitions for Nonlinear Nonlocal Aggregation-Diffusion Equations.Communications in mathematical physics · 2021Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Zebrafish have distinctive black stripes and yellow interstripes that form owing to the interaction of different pigment cells. We present a two-population agent-based model for the development and regeneration of these stripes and interstripes informed by recent experimental results. Our model describes stripe pattern formation, laser ablation and mutations. We find that fish growth shortens the necessary scale for long-range interactions and that iridophores, a third type of pigment cell, help align stripes and interstripes.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.