Evidence map›Paper›PMID 26538451›Full record

Trial reportScientific reports2015

Emergence of Hemagglutinin Mutations During the Course of Influenza Infection.

Anna Cushing, Amanda Kamali, Mark Winters, Erik S Hopmans, John M Bell, Susan M Grimes, Li C Xia, Nancy R Zhang, Ronald B Moss, Mark Holodniy and 1 more

Open access · goldAbstract readClinical Trial, Phase IIRandomized Controlled Trial
In one paragraph

Trial report in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Antigenic characterization of influenza and SARS-CoV-2 viruses.Analytical and bioanalytical chemistry · 2022
    Review
  4. Article
  5. TProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  6. Autoimmunity to hypocretin and molecular mimicry to flu in type 1 narcolepsy.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Anna CushingStanford Genome Technology Center, Stanford University, Palo Alto, CA, 94304, United States.
Amanda KamaliDivision of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, 94305, United States.
Mark WintersVA Palo Alto Health Care System, Palo Alto, CA 94304, United States.
Erik S HopmansStanford Genome Technology Center, Stanford University, Palo Alto, CA, 94304, United States.
John M BellStanford Genome Technology Center, Stanford University, Palo Alto, CA, 94304, United States.
Susan M GrimesStanford Genome Technology Center, Stanford University, Palo Alto, CA, 94304, United States.
Li C XiaDivision of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA, 94305, United States.
Nancy R ZhangDepart of Statistics, The Wharton School, University of Pennsylvania, Philadelphia, PA 19104 USA.
Ronald B MossAnsun BioPharma, Inc., San Diego, CA, 92121, United States.
Mark HolodniyDivision of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, 94305, United States.
Hanlee P JiStanford Genome Technology Center, Stanford University, Palo Alto, CA, 94304, United States.
Stanford University · USVA Palo Alto Health Care System · USAnsun BioPharma (United States) · USStanford Medicine · USUniversity of Pennsylvania · US

Funding

WHOLE YEAST GENOME TRANSCRIPTIONAL AND FUNCTIONAL GENE MAPS--A FEASIBILITY STUDYP01HG000205 · NHGRI · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE, HOWE, ROGER THOMAS · 1990 to 2016
$120.9M
Statistical Models for Genome Sequencing and AssociationR01HG006137 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI JI, HANLEE P, ZHANG, NANCY R · 2011 to 2022
$4.3M
NHGRI NIH HHS 2P01HG000205NHGRI NIH HHS P01 HG000205NHGRI NIH HHS R01 HG006137
6 · The paper itself

Abstract

Influenza remains a significant cause of disease mortality. The ongoing threat of influenza infection is partly attributable to the emergence of new mutations in the influenza genome. Among the influenza viral gene products, the hemagglutinin (HA) glycoprotein plays a critical role in influenza pathogenesis, is the target for vaccines and accumulates new mutations that may alter the efficacy of immunization. To study the emergence of HA mutations during the course of infection, we employed a deep-targeted sequencing method. We used samples from 17 patients with active H1N1 or H3N2 influenza infections. These patients were not treated with antivirals. In addition, we had samples from five patients who were analyzed longitudinally. Thus, we determined the quantitative changes in the fractional representation of HA mutations during the course of infection. Across individuals in the study, a series of novel HA mutations directly altered the HA coding sequence were identified. Serial viral sampling revealed HA mutations that either were stable, expanded or were reduced in representation during the course of the infection. Overall, we demonstrated the emergence of unique mutations specific to an infected individual and temporal genetic variation during infection.

Indexed as

AdultAntiviral AgentsDouble-Blind MethodFemaleGenetic VariationHemagglutinin Glycoproteins, Influenza VirusHumansInfluenza A Virus, H1N1 SubtypeInfluenza A Virus, H3N2 SubtypeInfluenza, HumanInfluenza VaccinesLongitudinal StudiesMaleMiddle AgedMutationVaccinationAntiviral AgentsHemagglutinin Glycoproteins, Influenza VirusInfluenza VaccinesViral Proteins

Identifiers

PMID26538451
PMCPMC4633648
OpenAlexW2398905981

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.