ArticleBMC genomics2015
Transcriptome, microRNA, and degradome analyses of the gene expression of Paulownia with phytoplamsa.
Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 35 citations in OpenAlex.
- Dual RNA-seq reveals the global transcriptome ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2025Article
- Mechanism of zju-miR156c-mediated network in regulating witches' broom symptom of Chinese jujube.Molecular plant pathology · 2024Article
- Paulownia Witches' Broom Disease: A Comprehensive Review.Microorganisms · 2024Review
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- Novel insights into water-deficit-responsive mRNAs and lncRNAs during fiber development in Gossypium hirsutum.BMC plant biology · 2022Article
- Full-length SMRT transcriptome sequencing and microsatellite characterization in Paulownia catalpifolia.Scientific reports · 2021Article
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- Plant Hormones in Phytoplasma Infected Plants.Frontiers in plant science · 2019Review
- ceRNA Cross-Talk in Paulownia Witches' Broom Disease.International journal of molecular sciences · 2018Article
- Article
- Regulation of Long Noncoding RNAs Responsive to Phytoplasma Infection inInternational journal of genomics · 2018Article
- Proteome Profiling of Paulownia Seedlings Infected with Phytoplasma.Frontiers in plant science · 2017Article
- Comparative Proteomic Analysis ofInternational journal of genomics · 2017Article
- Characterization of microRNAs of Beta macrocarpa and their responses to Beet necrotic yellow vein virus infection.PloS one · 2017Article
- Article
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundPaulownia witches' broom (PaWB) is a fatal disease of Paulownia caused by a phytoplasma. In previous studies, we found that plants with PaWB symptoms would revert to a healthy morphology after methyl methane sulfonate (MMS) treatment. To completely understand the gene expression profiles of the Paulownia-phytoplasma interaction, three high-throughput sequencing technologies were used to investigate changes of gene expression and microRNAs (miRNAs) in healthy Paulownia tomentosa plantlets, PaWB-infected plantlets, and PaWB-infected plantlets treated with 60 mg · L(-1) MMS.
methodsTranscriptome, miRNAs and degradome sequencing were performed to explore the global gene expression profiles in the process of Paulownia tomentosa with phytoplasma infection.
resultsA total of 98,714 all-unigenes, 62 conserved miRNAs, and 35 novel miRNAs were obtained, among which 902 differentially expressed genes (DEGs) and 24 miRNAs were found to be associated with PaWB disease. Subsequently, the target genes of these miRNAs were predicted by degradome sequencing. Interestingly, we found that 19 target genes of these differentially expressed miRNAs were among the 902 DEGs. The targets of pau-miR156g, pau-miR403, and pau-miR166c were significantly up-regulated in the P. tomentosa plantlets infected with phytoplasma. Interaction of miRNA -target genes mediated gene expression related to PaWB were identified.
conclusionsThe results elucidated the possible roles of the regulation of genes and miRNAs in the Paulownia-phytoplasma interaction, which will enrich our understanding of the mechanisms of PaWB disease in this plant.
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