Evidence map›Paper›PMID 26537787›Full record

ArticleNature communications2015

Targeting of SUMO substrates to a Cdc48-Ufd1-Npl4 segregase and STUbL pathway in fission yeast.

Julie Bonne Køhler, Triin Tammsalu, Maria Mønster Jørgensen, Nana Steen, Ronald Thomas Hay, Geneviève Thon

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Solo or in Concert: SUMOylation in Pathogenic Fungi.The plant pathology journal · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Article
  17. Signalling mechanisms and cellular functions of SUMO.Nature reviews. Molecular cell biology · 2022
    Review
  18. Smc5/6 Complex Promotes Rad3Molecular and cellular biology · 2022
    Article
  19. Coordinating DNA Replication and Mitosis through Ubiquitin/SUMO and CDK1.International journal of molecular sciences · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Julie Bonne KøhlerDepartment of Biology, University of Copenhagen, Ole Maaløes vej 5, Copenhagen DK-2200, Denmark.
Triin TammsaluCentre for Gene Regulation and Expression, Sir James Black Centre, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK.
Maria Mønster JørgensenDepartment of Biology, University of Copenhagen, Ole Maaløes vej 5, Copenhagen DK-2200, Denmark.
Nana SteenDepartment of Biology, University of Copenhagen, Ole Maaløes vej 5, Copenhagen DK-2200, Denmark.
Ronald Thomas HayCentre for Gene Regulation and Expression, Sir James Black Centre, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK.ORCID http://orcid.org/0000-0001-7113-9024
Geneviève ThonDepartment of Biology, University of Copenhagen, Ole Maaløes vej 5, Copenhagen DK-2200, Denmark.

Funding

Cancer Research UKWellcome Trust 098391
6 · The paper itself

Abstract

In eukaryotes, the conjugation of proteins to the small ubiquitin-like modifier (SUMO) regulates numerous cellular functions. A proportion of SUMO conjugates are targeted for degradation by SUMO-targeted ubiquitin ligases (STUbLs) and it has been proposed that the ubiquitin-selective chaperone Cdc48/p97-Ufd1-Npl4 facilitates this process. However, the extent to which the two pathways overlap, and how substrates are selected, remains unknown. Here we address these questions in fission yeast through proteome-wide analyses of SUMO modification sites. We identify over a thousand sumoylated lysines in a total of 468 proteins and quantify changes occurring in the SUMO modification status when the STUbL or Ufd1 pathways are compromised by mutations. The data suggest the coordinated processing of several classes of SUMO conjugates, many dynamically associated with centromeres or telomeres. They provide new insights into subnuclear organization and chromosome biology, and, altogether, constitute an extensive resource for the molecular characterization of SUMO function and dynamics.

Indexed as

Adenosine TriphosphatasesCarrier ProteinsCell Cycle ProteinsCentromereMannosyltransferasesNucleocytoplasmic Transport ProteinsRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSchizosaccharomycesSchizosaccharomyces pombe ProteinsSUMO-1 ProteinSumoylationTelomereTranscription FactorsUbiquitin-Protein Ligase ComplexesAdenosine TriphosphatasesCarrier ProteinsCDC48 protein, S cerevisiaeCell Cycle ProteinsMannosyltransferasesNPL4 protein, S cerevisiaeNpl4 protein, S pombeNucleocytoplasmic Transport ProteinsPmt3 protein, S pombeprotein O-mannosyltransferaseRepressor ProteinsRfp1 protein, S pombeRfp2 protein, S pombeSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsSlx5 protein, S cerevisiaeSlx8 protein, S cerevisiaeSlx8 protein, S pombeSUMO-1 ProteinTranscription FactorsUbiquitin-Protein Ligase ComplexesUbiquitin-Protein LigasesUFD1 protein, S cerevisiaeUfd1 protein, S pombeValosin Containing ProteinVesicular Transport Proteins

Identifiers

PMID26537787
PMCPMC4667616

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.