ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2016
Association analysis of grapevine bunch traits using a comprehensive approach.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- A complex reciprocal translocation is linked to reduced gamete viability in a loose-bunch grapevine somatic variant.BMC plant biology · 2026Article
- Article
- Leveraging foundation models to dissect the genetic basis of cluster compactness and yield in grapevine.Scientific reports · 2025Article
- Characterization of Bunch Compactness in a Diverse Collection ofPlants (Basel, Switzerland) · 2025Article
- Dynamic temporal transcriptome analysis reveals grape VlMYB59-Horticulture research · 2024Article
- Biography ofHorticulture research · 2024Article
- Lateral shoots removal has little effect on berry growth of grapevine (Vitis vinifera L.) 'Riesling' in cool climate.Scientific reports · 2022Article
- Toward the identification of molecular markers associated with phytochemical traits in the Iranian sumac (Food science & nutrition · 2021Article
- Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis.BMC plant biology · 2021Article
- Differential expression of transcription factor- and further growth-related genes correlates with contrasting cluster architecture in Vitis vinifera 'Pinot Noir' and Vitis spp. genotypes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Article
- Population genetic analysis in old Montenegrin vineyards reveals ancient ways currently active to generate diversity in Vitis vinifera.Scientific reports · 2020Article
- Identification of SNPs and InDels associated with berry size in table grapes integrating genetic and transcriptomic approaches.BMC plant biology · 2020Article
- Article
- A novel high-density grapevine (Vitis vinifera L.) integrated linkage map using GBS in a half-diallel population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Identification of co-located QTLs and genomic regions affecting grapevine cluster architecture.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Genome-wide association study of berry-related traits in grape [Horticulture research · 2019Article
- GAFunctional & integrative genomics · 2018Article
- The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box GenePlant physiology · 2018Article
- Article
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
key messageA set of SNP markers associated to bunch compactness and related traits were identified in grapevine. ABSTRACT: Bunch compactness plays an important role in the sanitary status and perceived quality of table and wine grapes, being influenced by cultural practices and by environmental and genetic factors, which are mostly unknown. In this work, we took advantage of genetic, genomic and bioinformatic advances to analyze part of its molecular basis through a combination of transcriptomic and association analyses. Results from different transcriptomic comparisons between loose and compact grapevine clones were analyzed to select a set of candidate genes likely involved in the observed variation for bunch compactness. Up to 183 genes were sequenced in a grapevine collection, and 7032 single nucleotide polymorphisms (SNPs) were detected in more than 100 varieties with a frequency of the minor allele over 5%. They were used to test their association in three consecutive seasons with bunch compactness and two of its most influencing factors: total berry number and length of the first ramification of the rachis. Only one SNP was associated with berry number in two seasons, suggesting the high sensitiveness of this trait to seasonal environmental changes. On the other hand, we found a set of SNPs associated with both the first ramification length and bunch compactness in various seasons, in several genes which had not previously related to bunch compactness or bunch compactness-related traits. They are proposed as interesting candidates for further functional analyses aimed to verify the results obtained in this work, as a previous step to their inclusion in marker-assisted selection strategies.
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