ArticlePloS one2015
Large-Scale Transcriptome Analysis of Cucumber and Botrytis cinerea during Infection.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- Stereospecific Antifungal Activity of Strigolactone Analogues AgainstJournal of fungi (Basel, Switzerland) · 2026Article
- Comparative transcriptome profiling and co-expression network analysis uncover the key genes associated with pear petal defense responses againstFrontiers in plant science · 2024Article
- Pan-Genome Analysis ofInternational journal of molecular sciences · 2023Article
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- Comparative Transcriptome Analysis of Deep-Rooting and Shallow-Rooting Potato (Plants (Basel, Switzerland) · 2022Article
- Deciphering the Molecular Signatures Associated With Resistance toFrontiers in plant science · 2022Article
- Transcriptional profiling of defense responses toFrontiers in plant science · 2022Article
- Virulence-related metabolism is activated inHorticulture research · 2022Article
- Transcriptional differentiation driving Cucumis sativus-Botrytis cinerea interactions based on the Skellam model and Bayesian networks.AMB Express · 2021Article
- Transcriptome Profiling of Cucumber (International journal of molecular sciences · 2021Article
- Contrasting transcriptional responses to Fusarium virguliforme colonization in symptomatic and asymptomatic hosts.The Plant cell · 2021Article
- Expression of cyanobacterial genes enhanced COPeerJ · 2021Article
- Genomic-Assisted Marker Development Suitable forFrontiers in plant science · 2021Article
- Overexpression of SlMYB75 enhances resistance to Botrytis cinerea and prolongs fruit storage life in tomato.Plant cell reports · 2021Article
- Article
- Transcriptome analysis and functional validation reveal a novel gene, BcCGF1, that enhances fungal virulence by promoting infection-related development and host penetration.Molecular plant pathology · 2020Article
- Network pharmacology of bioactives from Sorghum bicolor with targets related to diabetes mellitus.PloS one · 2020Article
- Article
- A secreted metal-binding protein protects necrotrophic phytopathogens from reactive oxygen species.Nature communications · 2019Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Cucumber gray mold caused by Botrytis cinerea is considered one of the most serious cucumber diseases. With the advent of Hi-seq technology, it is possible to study the plant-pathogen interaction at the transcriptome level. To the best of our knowledge, this is the first application of RNA-seq to identify cucumber and B. cinerea differentially expressed genes (DEGs) before and after the plant-pathogen interaction. In total, 248,908,688 raw reads were generated; after removing low-quality reads and those containing adapter and poly-N, 238,341,648 clean reads remained to map the reference genome. There were 3,512 cucumber DEGs and 1,735 B. cinerea DEGs. GO enrichment and KEGG enrichment analysis were performed on these DEGs to study the interaction between cucumber and B. cinerea. To verify the reliability and accuracy of our transcriptome data, 5 cucumber DEGs and 5 B. cinerea DEGs were chosen for RT-PCR verification. This is the first systematic transcriptome analysis of components related to the B. cinerea-cucumber interaction. Functional genes and putative pathways identified herein will increase our understanding of the mechanism of the pathogen-host interaction.
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