Evidence map›Paper›PMID 26536272›Full record

ArticleBiophysical journal2015

Lack of Dependence of the Sizes of the Mesoscopic Protein Clusters on Electrostatics.

Maria A Vorontsova, Ho Yin Chan, Vassiliy Lubchenko, Peter G Vekilov

Abstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
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  11. Phase-separating RNA-binding proteins form heterogeneous distributions of clusters in subsaturated solutions.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
  13. Nucleation of glucose isomerase protein crystals in a nonclassical disguise: The role of crystalline precursors.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Mesoscopic protein-rich clusters host the nucleation of mutant p53 amyloid fibrils.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Article
  16. Whole-Cell Models and Simulations in Molecular Detail.Annual review of cell and developmental biology · 2019
    Review
  17. Article
  18. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Maria A VorontsovaDepartment of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas.
Ho Yin ChanDepartment of Physics, University of Houston, Houston, Texas.
Vassiliy LubchenkoDepartment of Physics, University of Houston, Houston, Texas; Department of Chemistry, University of Houston, Houston, Texas.
Peter G VekilovDepartment of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas; Department of Chemistry, University of Houston, Houston, Texas. Electronic address: vekilov@uh.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein-rich clusters of steady submicron size and narrow size distribution exist in protein solutions in apparent violation of the classical laws of phase equilibrium. Even though they contain a minor fraction of the total protein, evidence suggests that they may serve as essential precursors for the nucleation of ordered solids such as crystals, sickle-cell hemoglobin polymers, and amyloid fibrils. The cluster formation mechanism remains elusive. We use the highly basic protein lysozyme at nearly neutral and lower pH as a model and explore the response of the cluster population to the electrostatic forces, which govern numerous biophysical phenomena, including crystallization and fibrillization. We tune the strength of intermolecular electrostatic forces by varying the solution ionic strength I and pH and find that despite the weaker repulsion at higher I and pH, the cluster size remains constant. Cluster responses to the presence of urea and ethanol demonstrate that cluster formation is controlled by hydrophobic interactions between the peptide backbones, exposed to the solvent after partial protein unfolding that may lead to transient protein oligomers. These findings reveal that the mechanism of the mesoscopic clusters is fundamentally different from those underlying the two main classes of ordered protein solid phases, crystals and amyloid fibrils, and partial unfolding of the protein chain may play a significant role.

Indexed as

Static ElectricityEthanolHydrogen-Ion ConcentrationHydrophobic and Hydrophilic InteractionsModels, MolecularMuramidaseProtein MultimerizationSolutionsUreaWaterEthanolMuramidaseSolutionsUreaWater

Identifiers

PMID26536272
PMCPMC4643268

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.