Evidence map›Paper›PMID 26536270›Full record

ArticleBiophysical journal2015

Class A Plexins Are Organized as Preformed Inactive Dimers on the Cell Surface.

Morgan Marita, Yuxiao Wang, Megan J Kaliszewski, Kevin C Skinner, William D Comar, Xiaojun Shi, Pranathi Dasari, Xuewu Zhang, Adam W Smith

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Structure and evolution of neuronal wiring receptors and ligands.Developmental dynamics : an official publication of the American Association of Anatomists · 2023
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Robo1 Forms a Compact Dimer-of-Dimers Assembly.Structure (London, England : 1993) · 2018
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Secondary PDZ domain-binding site on class B plexins enhances the affinity for PDZ-RhoGEF.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Morgan MaritaDepartment of Chemistry, University of Akron, Akron, Ohio.
Yuxiao WangDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, Texas; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, California.
Megan J KaliszewskiDepartment of Chemistry, University of Akron, Akron, Ohio.
Kevin C SkinnerDepartment of Chemistry, University of Akron, Akron, Ohio.
William D ComarDepartment of Chemistry, University of Akron, Akron, Ohio.
Xiaojun ShiDepartment of Chemistry, University of Akron, Akron, Ohio.
Pranathi DasariDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, Texas.
Xuewu ZhangDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, Texas.
Adam W SmithDepartment of Chemistry, University of Akron, Akron, Ohio. Electronic address: awsmith5@uakron.edu.
University of Akron · USThe University of Texas Southwestern Medical Center · USUniversity of California, San Francisco · US

Funding

Signaling and Regulation Mechanisms of PlexinR01GM088197 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI ZHANG, XUEWU · 2009 to 2017
$2.8M
NIGMS NIH HHS GM088197NIGMS NIH HHS R01 GM088197
6 · The paper itself

Abstract

Plexins are single-pass transmembrane receptors that bind the axon guidance molecules semaphorins. Single-pass transmembrane proteins are an important class of receptors that display a wide variety of activation mechanisms, often involving ligand-dependent dimerization or conformational changes. Resolving the activation mechanism and dimerization state of these receptors is extremely challenging, especially in a live-cell environment. Here, we report on the dimerization state of PlexinA4 and its response to activation by semaphorin binding. Semaphorins are dimeric molecules that activate plexin by binding two copies of plexin simultaneously and inducing formation of a specific active dimer of plexin. An open question is whether there are preexisting plexin dimers that could act as autoinhibitory complexes. We address these questions with pulsed interleaved excitation fluorescence cross-correlation spectroscopy (PIE-FCCS). PIE-FCCS is a two-color fluorescence microscopy method that is directly sensitive to protein dimerization in a live-cell environment. With PIE-FCCS, we show that inactive PlexinA4 is dimerized in the live-cell plasma membrane. By comparing the cross correlation of full-length PlexinA4 to control proteins and plexin mutants, we show that dimerization of inactive PlexinA4 requires the Sema domain, but not the cytoplasmic domain. Ligand stimulation with Sema6A does not change the degree of cross correlation, indicating that plexin activation does not lead to higher-order oligomerization. Together, the results suggest that semaphorin activates plexin by disrupting an inhibitory plexin dimer and inducing the active dimer.

Indexed as

AnimalsCell MembraneChlorocebus aethiopsCOS CellsLuminescent ProteinsMiceMicroscopy, FluorescenceMutationNerve Tissue ProteinsOptical ImagingProtein MultimerizationReceptors, Cell SurfaceSemaphorinsSpectrometry, FluorescenceTransfectionLuminescent ProteinsNerve Tissue ProteinsPlxna4 protein, mouseReceptors, Cell SurfaceSemaphorins

Identifiers

PMID26536270
PMCPMC4643210
OpenAlexW2192976829

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.