Evidence map›Paper›PMID 26536264›Full record

ArticleBiophysical journal2015

Structural Changes and Proapoptotic Peroxidase Activity of Cardiolipin-Bound Mitochondrial Cytochrome c.

Abhishek Mandal, Cody L Hoop, Maria DeLucia, Ravindra Kodali, Valerian E Kagan, Jinwoo Ahn, Patrick C A van der Wel

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
6.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Alkaline State of the Domain-Swapped Dimer of Human CytochromeJournal of the American Chemical Society · 2022
    Article
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  11. Article
  12. Article
  13. Article
  14. Article
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  16. Article
  17. Article
  18. Advances in studying protein disorder with solid-state NMR.Solid state nuclear magnetic resonance · 2020
    Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Abhishek MandalDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Cody L HoopDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Maria DeLuciaDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Ravindra KodaliDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Valerian E KaganDepartments of Environmental and Occupational Health, Chemistry, Pharmacology, and Chemical Biology and Center for Free Radical and Antioxidant Health, University of Pittsburgh, Pittsburgh, Pennsylvania.
Jinwoo AhnDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania.
Patrick C A van der WelDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania. Electronic address: pvdwel@pitt.edu.
University of Pittsburgh · US

Funding

UNIVERSITY OF PITTSBURGH CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTE: BPCAUL1RR024153 · NCRR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2006 to 2011
$73.9M
Training and EducationU19AI068021 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GREENBERGER, JOEL S · 2005 to 2019
$44.4M
Regulation of Cardiolin Byosynthesis in Epithelial InjuryP01HL114453 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MALLAMPALLI, RAMA K · 2014 to 2023
$21.3M
Lung Oxidative Stress/Inflammation By Carbon NanotubesR01OH008282 · OH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KAGAN, VALERIAN E · 2005 to 2014
$2.8M
Oxygenated Species of Cardiolipins as Biomarkers of Mitochondrial DysfunctionR01ES020693 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KAGAN, VALERIAN E, TYURINA, YULIA Y · 2011 to 2015
$1.7M
Training in the Molecular Biophysics and Structural BiologyT32GM088119 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HINCK, ANDREW P · 2011 to 2020
$1.6M
NCRR NIH HHS UL1 RR024153NHLBI NIH HHS HL114453NHLBI NIH HHS P01 HL114453NIAID NIH HHS U19 AI068021NIEHS NIH HHS ES020693NIEHS NIH HHS R01 ES020693NIGMS NIH HHS T32 GM088119NIOSH CDC HHS OH008282NIOSH CDC HHS R01 OH008282PHS HHS U19 AIO68021
6 · The paper itself

Abstract

The cellular process of intrinsic apoptosis relies on the peroxidation of mitochondrial lipids as a critical molecular signal. Lipid peroxidation is connected to increases in mitochondrial reactive oxygen species, but there is also a required role for mitochondrial cytochrome c (cyt-c). In apoptotic mitochondria, cyt-c gains a new function as a lipid peroxidase that catalyzes the reactive oxygen species-mediated chemical modification of the mitochondrial lipid cardiolipin (CL). This peroxidase activity is caused by a conformational change in the protein, resulting from interactions between cyt-c and CL. The nature of the conformational change and how it causes this gain-of-function remain uncertain. Via a combination of functional, structural, and biophysical experiments we investigate the structure and peroxidase activity of cyt-c in its membrane-bound state. We reconstituted cyt-c with CL-containing lipid vesicles, and determined the increase in peroxidase activity resulting from membrane binding. We combined these assays of CL-induced proapoptotic activity with structural and dynamic studies of the membrane-bound protein via solid-state NMR and optical spectroscopy. Multidimensional magic angle spinning (MAS) solid-state NMR of uniformly (13)C,(15)N-labeled protein was used to detect site-specific conformational changes in oxidized and reduced horse heart cyt-c bound to CL-containing lipid bilayers. MAS NMR and Fourier transform infrared measurements show that the peripherally membrane-bound cyt-c experiences significant dynamics, but also retains most or all of its secondary structure. Moreover, in two-dimensional and three-dimensional MAS NMR spectra the CL-bound cyt-c displays a spectral resolution, and thus structural homogeneity, that is inconsistent with extensive membrane-induced unfolding. Cyt-c is found to interact primarily with the membrane interface, without significantly disrupting the lipid bilayer. Thus, membrane binding results in cyt-c gaining the increased peroxidase activity that represents its pivotal proapoptotic function, but we do not observe evidence for large-scale unfolding or penetration into the membrane core.

Indexed as

ApoptosisCarbon-13 Magnetic Resonance SpectroscopyCardiolipinsCytochromes cEscherichia coliLipid BilayersMitochondriaNuclear Magnetic Resonance, BiomolecularPeroxidasePhosphatidylcholinesProtein ConformationSpectroscopy, Fourier Transform InfraredSpectrum Analysis1,2-oleoylphosphatidylcholineCardiolipinsCytochromes cLipid BilayersPeroxidasePhosphatidylcholines

Identifiers

PMID26536264
PMCPMC4643272
OpenAlexW1945465158

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.