Evidence map›Paper›PMID 26536256›Full record

ArticleBiophysical journal2015

Predictive Spatiotemporal Manipulation of Signaling Perturbations Using Optogenetics.

Leo Valon, Fred Etoc, Amanda Remorino, Florencia di Pietro, Xavier Morin, Maxime Dahan, Mathieu Coppey

Abstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Spindle reorientation in response to mechanical stress is an emergent property of the spindle positioning mechanisms.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Viscoelasticity, Like Forces, Plays a Role in Mechanotransduction.Frontiers in cell and developmental biology · 2022
    Review
  14. Review
  15. Article
  16. The Actin Cytoskeleton as an Active Adaptive Material.Annual review of condensed matter physics · 2020
    Article
  17. Review
  18. Optogenetic Rac1 engineered from membrane lipid-binding RGS-LOV for inducible lamellipodia formation.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2020
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Leo ValonLaboratoire Physico-Chimie, Institut Curie, Centre National de la Recherche Scientifique UMR168, Paris-Science Lettres, Université Pierre et Marie Curie-Paris 6, Paris, France.
Fred EtocCenter for Studies in Physics and Biology, The Rockefeller University, New York, New York.
Amanda RemorinoLaboratoire Physico-Chimie, Institut Curie, Centre National de la Recherche Scientifique UMR168, Paris-Science Lettres, Université Pierre et Marie Curie-Paris 6, Paris, France.
Florencia di PietroInstitut de Biologie de l'École Normale Supérieure, Ecole Normale Supérieure, Paris, France.
Xavier MorinInstitut de Biologie de l'École Normale Supérieure, Ecole Normale Supérieure, Paris, France.
Maxime DahanLaboratoire Physico-Chimie, Institut Curie, Centre National de la Recherche Scientifique UMR168, Paris-Science Lettres, Université Pierre et Marie Curie-Paris 6, Paris, France.
Mathieu CoppeyLaboratoire Physico-Chimie, Institut Curie, Centre National de la Recherche Scientifique UMR168, Paris-Science Lettres, Université Pierre et Marie Curie-Paris 6, Paris, France. Electronic address: mathieu.coppey@curie.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recently developed optogenetic methods promise to revolutionize cell biology by allowing signaling perturbations to be controlled in space and time with light. However, a quantitative analysis of the relationship between a custom-defined illumination pattern and the resulting signaling perturbation is lacking. Here, we characterize the biophysical processes governing the localized recruitment of the Cryptochrome CRY2 to its membrane-anchored CIBN partner. We develop a quantitative framework and present simple procedures that enable predictive manipulation of protein distributions on the plasma membrane with a spatial resolution of 5 μm. We show that protein gradients of desired levels can be established in a few tens of seconds and then steadily maintained. These protein gradients can be entirely relocalized in a few minutes. We apply our approach to the control of the Cdc42 Rho GTPase activity. By inducing strong localized signaling perturbation, we are able to monitor the initiation of cell polarity and migration with a remarkable reproducibility despite cell-to-cell variability.

Indexed as

Animalscdc42 GTP-Binding ProteinCell MembraneCryptochromesDiffusionFluorescence Recovery After PhotobleachingGreen Fluorescent ProteinsHeLa CellsHumansLightLuminescent ProteinsMiceNIH 3T3 CellsOptogeneticsRed Fluorescent Proteincdc42 GTP-Binding ProteinCRY2 protein, humanCryptochromesGreen Fluorescent ProteinsLuminescent ProteinsRed Fluorescent Protein

Identifiers

PMID26536256
PMCPMC4643200

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.