Evidence map›Paper›PMID 26534961›Full record

ArticleThe Journal of biological chemistry2016

Time-resolved Studies of IsdG Protein Identify Molecular Signposts along the Non-canonical Heme Oxygenase Pathway.

Bennett R Streit, Ravi Kant, Monika Tokmina-Lukaszewska, Arianna I Celis, Melodie M Machovina, Eric P Skaar, Brian Bothner, Jennifer L DuBois

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

  1. The roles of Asn7 and Trp67 in tuning the ferryl haem form ofDalton transactions (Cambridge, England : 2003) · 2026
    Article
  2. Review
  3. Stabilization of the Ferryl═Oxoheme Form ofJournal of the American Chemical Society · 2025
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  9. Fur regulation of Staphylococcus aureus heme oxygenases is required for heme homeostasis.International journal of medical microbiology : IJMM · 2018
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  10. Review
  11. Article
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  16. mSphere
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Bennett R StreitFrom the Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59715-3400.
Ravi KantFrom the Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59715-3400.
Monika Tokmina-LukaszewskaFrom the Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59715-3400.
Arianna I CelisFrom the Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59715-3400.
Melodie M MachovinaFrom the Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59715-3400.
Eric P Skaarthe Department of Pathology, Microbiology and Immunology, Vanderbilt University School of Medicine and the Tennessee Valley Healthcare Systems, United States Department of Veterans Affairs, Nashville, Tennessee 37232.
Brian BothnerFrom the Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59715-3400.
Jennifer L DuBoisFrom the Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59715-3400, jdubois@chemistry.montana.edu.
Montana State University · USVanderbilt University · US

Funding

Mechanism and function of heme-iron utilization in staphylococcal pathogenesisR01AI069233 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI SKAAR, ERIC P · 2006 to 2020
$5.6M
Pilot Grants ProgramP30GM110732 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI QUINN, MARK T · 2014 to 2018
$5.4M
Understanding the diverse biochemistry of the chlorite dismutase family: from O2 to hemeR01GM090260 · NIGMS · UNIVERSITY OF NOTRE DAME · PI DUBOIS, JENNIFER L · 2009 to 2018
$2.7M
MULTI-USER COMPUTER SYSTEM FOR AUDITORY RESEARCHS10RR002437 · NCRR · MASSACHUSETTS EYE AND EAR INFIRMARY · PI KIANG, NELSON Y · 1985 to 1985
–
NCRR NIH HHS 5P20RR02437NIAID NIH HHS R01 AI069233NIAID NIH HHS R01AI069233NIGMS NIH HHS GM090260NIGMS NIH HHS P30 GM110732NIGMS NIH HHS R01 GM090260
6 · The paper itself

Abstract

IsdGs are heme monooxygenases that break open the tetrapyrrole, releasing the iron, and thereby allowing bacteria expressing this protein to use heme as a nutritional iron source. Little is currently known about the mechanism by which IsdGs degrade heme, although the products differ from those generated by canonical heme oxygenases. A synthesis of time-resolved techniques, including in proteo mass spectrometry and conventional and stopped-flow UV/visible spectroscopy, was used in conjunction with analytical methods to define the reaction steps mediated by IsdG from Staphylococcus aureus and their time scales. An apparent meso-hydroxyheme (forming with k = 0.6 min(-1), pH 7.4, 10 mm ascorbate, 10 μm IsdG-heme, 22 °C) was identified as a likely common intermediate with the canonical heme oxygenases. Unlike heme oxygenases, this intermediate does not form with added H2O2 nor does it convert to verdoheme and CO. Rather, the next observable intermediates (k = 0.16 min(-1)) were a set of formyloxobilin isomers, similar to the mycobilin products of the IsdG homolog from Mycobacterium tuberculosis (MhuD). These converted in separate fast and slow phases to β-/δ-staphylobilin isomers and formaldehyde (CH2O). Controlled release of this unusual C1 product may support IsdG's dual role as both an oxygenase and a sensor of heme availability in S. aureus.

Indexed as

Signal TransductionAscorbic AcidChromatography, LiquidHemeHeme Oxygenase (Decyclizing)HumansHydrogen PeroxideIsotopesKineticsMass SpectrometryOxygenOxygenasesSpectrophotometry, UltravioletStaphylococcus aureusTime FactorsAscorbic AcidHemeHeme Oxygenase (Decyclizing)Hydrogen PeroxideIsdG protein, Staphylococcus aureusIsotopesOxygenOxygenasescarbon monoxidehemeheme oxygenaseironStaphylococcus aureus (S. aureus)tetrapyrrole

Identifiers

PMID26534961
PMCPMC4705404
OpenAlexW2229731338

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.