Evidence map›Paper›PMID 26530418›Full record

ArticleG3 (Bethesda, Md.)2015

Disease Variant Landscape of a Large Multiethnic Population of Moyamoya Patients by Exome Sequencing.

Lorelei D Shoemaker, Michael J Clark, Anil Patwardhan, Gemma Chandratillake, Sarah Garcia, Rong Chen, Alexander A Morgan, Nan Leng, Scott Kirk, Richard Chen and 3 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 52 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Association of rareAnnals of translational medicine · 2022
    Article
  11. Article
  12. Life (Basel, Switzerland) · 2022
    Article
  13. The Genetic Basis of Moyamoya Disease.Translational stroke research · 2022
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Novel missense variants in theHuman genome variation · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Lorelei D ShoemakerDepartment of Neurosurgery and Stanford Stroke Center, Stanford University, Stanford, California 94305.
Michael J ClarkPersonalis Inc., Menlo Park, California 94025.
Anil PatwardhanPersonalis Inc., Menlo Park, California 94025.
Gemma ChandratillakePersonalis Inc., Menlo Park, California 94025.
Sarah GarciaPersonalis Inc., Menlo Park, California 94025.
Rong ChenPersonalis Inc., Menlo Park, California 94025.
Alexander A MorganStanford Medical School, Stanford University, Stanford, California 94305.
Nan LengPersonalis Inc., Menlo Park, California 94025.
Scott KirkPersonalis Inc., Menlo Park, California 94025.
Richard ChenPersonalis Inc., Menlo Park, California 94025.
Douglas J CookCentre for Neuroscience Studies and the Department of Surgery, Queen's University, Kingston, Ontario, K7L 3N6.
Michael SnyderDepartment of Genetics, Stanford University, Stanford, California 94305.
Gary K SteinbergDepartment of Neurosurgery and Stanford Stroke Center, Stanford University, Stanford, California 94305 gsteinberg@stanford.edu.
Personalis (United States) · USStanford Medicine · USStanford University · USQueen's University · CA

Funding

INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
NHGRI NIH HHS T32 HG000044
6 · The paper itself

Abstract

Moyamoya disease (MMD) is a rare disorder characterized by cerebrovascular occlusion and development of hemorrhage-prone collateral vessels. Approximately 10-12% of cases are familial, with a presumed low penetrance autosomal dominant pattern of inheritance. Diagnosis commonly occurs only after clinical presentation. The recent identification of the RNF213 founder mutation (p.R4810K) in the Asian population has made a significant contribution, but the etiology of this disease remains unclear. To further develop the variant landscape of MMD, we performed high-depth whole exome sequencing of 125 unrelated, predominantly nonfamilial, ethnically diverse MMD patients in parallel with 125 internally sequenced, matched controls using the same exome and analysis platform. Three subpopulations were established: Asian, Caucasian, and non-RNF213 founder mutation cases. We provided additional support for the previously observed RNF213 founder mutation (p.R4810K) in Asian cases (P = 6.01×10(-5)) that was enriched among East Asians compared to Southeast Asian and Pacific Islander cases (P = 9.52×10(-4)) and was absent in all Caucasian cases. The most enriched variant in Caucasian (P = 7.93×10(-4)) and non-RNF213 founder mutation (P = 1.51×10(-3)) cases was ZXDC (p.P562L), a gene involved in MHC Class II activation. Collapsing variant methodology ranked OBSCN, a gene involved in myofibrillogenesis, as most enriched in Caucasian (P = 1.07×10(-4)) and non-RNF213 founder mutation cases (P = 5.31×10(-5)). These findings further support the East Asian origins of the RNF213 (p.R4810K) variant and more fully describe the genetic landscape of multiethnic MMD, revealing novel, alternative candidate variants and genes that may be important in MMD etiology and diagnosis.

Indexed as

ExomeGenetic Predisposition to DiseaseGenetic VariationHigh-Throughput Nucleotide SequencingAdenosine TriphosphatasesAdolescentAdultAge of OnsetAsian PeopleCase-Control StudiesChildEthnicityFemaleFounder EffectGenetic Association StudiesHumansAdenosine TriphosphatasesRNF213 protein, humanUbiquitin-Protein Ligasescerebrovascular diseasehemorrhageOBSCNRNF213ZXDC

Identifiers

PMID26530418
PMCPMC4704723
OpenAlexW2222710573

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.