ArticleG3 (Bethesda, Md.)2015
Application of Population Sequencing (POPSEQ) for Ordering and Imputing Genotyping-by-Sequencing Markers in Hexaploid Wheat.
Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Genome-wide association analysis of salinity tolerance-related loci in bread wheat (Triticum aestivum L.) at the germination stage.BMC plant biology · 2026Article
- Integration and imputation of GBS-derived and DArTseq-derived SNP markers in assessing genetic diversity of bread wheat genotypes.BMC genomics · 2026Article
- Genetic mapping of quantitative trait loci associated with nematode resistance in melon using genotyping-by-sequencing.Frontiers in plant science · 2026Article
- Genetic dissection of value-added quality traits and agronomic parameters through genome-wide association mapping in bread wheat (Frontiers in plant science · 2024Article
- Drought-Tolerance QTLs Associated with Grain Yield and Related Traits in Spring Bread Wheat.Plants (Basel, Switzerland) · 2022Article
- Genotyping-by-Sequencing Based Molecular Genetic Diversity of Pakistani Bread Wheat (Frontiers in genetics · 2022Article
- Identification of Quantitative Trait Loci for Leaf Rust and Stem Rust Seedling Resistance in Bread Wheat Using a Genome-Wide Association Study.Plants (Basel, Switzerland) · 2021Article
- Dissection of the genetic basis of genotype-by-environment interactions for grain yield and main agronomic traits in Iranian bread wheat landraces and cultivars.Scientific reports · 2021Article
- Article
- Genome-Wide Association Study Reveals Novel Genetic Loci for Quantitative Resistance to Septoria Tritici Blotch in Wheat (Frontiers in plant science · 2021Article
- Elucidating SNP-based genetic diversity and population structure of advanced breeding lines of bread wheat (PeerJ · 2021Article
- Genetic Diversity and Population Structure of Asian and European Common Wheat Accessions Based on Genotyping-By-Sequencing.Frontiers in genetics · 2020Article
- Article
- Genome-wide association study of agronomic traits in bread wheat reveals novel putative alleles for future breeding programs.BMC plant biology · 2019Article
- Dense genotyping-by-sequencing linkage maps of two Synthetic W7984×Opata reference populations provide insights into wheat structural diversity.Scientific reports · 2019Article
- Genome-Wide Association Mapping of Grain Micronutrients Concentration inFrontiers in plant science · 2019Article
- Imputation accuracy of wheat genotyping-by-sequencing (GBS) data using barley and wheat genome references.PloS one · 2019Article
- Conversion of array-based single nucleotide polymorphic markers for use in targeted genotyping by sequencing in hexaploid wheat (Triticum aestivum).Plant biotechnology journal · 2018Article
- Tools for Genetic Studies in Experimental Populations of Polyploids.Frontiers in plant science · 2018Review
- Genotyping-by-Sequencing Derived High-Density Linkage Map and its Application to QTL Mapping of Flag Leaf Traits in Bread Wheat.Scientific reports · 2017Article
Corrections and comments
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Authors and funding
3 authors.
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No grant is acknowledged in the PubMed record.
Abstract
The advancement of next-generation sequencing technologies in conjunction with new bioinformatics tools enabled fine-tuning of sequence-based, high-resolution mapping strategies for complex genomes. Although genotyping-by-sequencing (GBS) provides a large number of markers, its application for association mapping and genomics-assisted breeding is limited by a large proportion of missing data per marker. For species with a reference genomic sequence, markers can be ordered on the physical map. However, in the absence of reference marker order, the use and imputation of GBS markers is challenging. Here, we demonstrate how the population sequencing (POPSEQ) approach can be used to provide marker context for GBS in wheat. The utility of a POPSEQ-based genetic map as a reference map to create genetically ordered markers on a chromosome for hexaploid wheat was validated by constructing an independent de novo linkage map of GBS markers from a Synthetic W7984 × Opata M85 recombinant inbred line (SynOpRIL) population. The results indicated that there is strong agreement between the independent de novo linkage map and the POPSEQ mapping approach in mapping and ordering GBS markers for hexaploid wheat. After ordering, a large number of GBS markers were imputed, thus providing a high-quality reference map that can be used for QTL mapping for different traits. The POPSEQ-based reference map and whole-genome sequence assemblies are valuable resources that can be used to order GBS markers and enable the application of highly accurate imputation methods to leverage the application GBS markers in wheat.
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