Evidence map›Paper›PMID 26528405›Full record

ArticlePeerJ2015

Genetic analysis of Thai cattle reveals a Southeast Asian indicine ancestry.

Pongsakorn Wangkumhang, Alisa Wilantho, Philip J Shaw, Laurence Flori, Katayoun Moazami-Goudarzi, Mathieu Gautier, Monchai Duangjinda, Anunchai Assawamakin, Sissades Tongsima

Abstract read
In one paragraph

Article in PeerJ, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Foods (Basel, Switzerland) · 2022
    Article
  9. Kouprey (iScience · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. A Novel SNP inAnimals : an open access journal from MDPI · 2019
    Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Pongsakorn WangkumhangGenome Technology Research Unit, National Center for Genetic Engineering and Biotechnology , Pathum Thani , Thailand.
Alisa WilanthoGenome Technology Research Unit, National Center for Genetic Engineering and Biotechnology , Pathum Thani , Thailand.
Philip J ShawMedical Molecular Biology Research Unit, National Center for Genetic Engineering and Biotechnology , Pathum Thani , Thailand.
Laurence FloriUMR INTERTRYP, CIRAD , Montpellier , France ; UMR 1313 GABI, INRA , Jouy-en-Josas , France.
Katayoun Moazami-GoudarziUMR 1313 GABI, INRA , Jouy-en-Josas , France.
Mathieu GautierUMR CBGP (INRA/CIRAD/IRD/Supagro), INRA , Montferrier-sur-Lez , France.
Monchai DuangjindaDepartment of Animal Science, Faculty of Agriculture, Khon Kaen University , Khon Kaen , Thailand.
Anunchai AssawamakinDepartment of Pharmacology, Faculty of Pharmacy, Mahidol University , Bangkok , Thailand.
Sissades TongsimaGenome Technology Research Unit, National Center for Genetic Engineering and Biotechnology , Pathum Thani , Thailand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cattle commonly raised in Thailand have characteristics of Bos indicus (zebu). We do not know when or how cattle domestication in Thailand occurred, and so questions remain regarding their origins and relationships to other breeds. We obtained genome-wide SNP genotypic data of 28 bovine individuals sampled from four regions: North (Kho-Khaolampoon), Northeast (Kho-Isaan), Central (Kho-Lan) and South (Kho-Chon) Thailand. These regional varieties have distinctive traits suggestive of breed-like genetic variations. From these data, we confirmed that all four Thai varieties are Bos indicus and that they are distinct from other indicine breeds. Among these Thai cattle, a distinctive ancestry pattern is apparent, which is the purest within Kho-Chon individuals. This ancestral component is only present outside of Thailand among other indicine breeds in Southeast Asia. From this pattern, we conclude that a unique Bos indicus ancestor originated in Southeast Asia, and native Kho-Chon Thai cattle retain the signal of this ancestry with limited admixture of other bovine ancestors.

Indexed as

AdmixtureipPCAKho-ChonKho-IsaanKho-KhaolampoonKho-LanPopulation geneticsPopulation structure

Identifiers

PMID26528405
PMCPMC4627918

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.