Evidence map›Paper›PMID 26528297›Full record

ArticleFrontiers in plant science2015

Transcriptome analysis of Phoenix canariensis Chabaud in response to Rhynchophorus ferrugineus Olivier attacks.

Antonio Giovino, Edoardo Bertolini, Veronica Fileccia, Mohamad Al Hassan, Massimo Labra, Federico Martinelli

Abstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Transcriptome sequencing ofFrontiers in genetics · 2023
    Article
  3. Article
  4. Transcriptome profiling ofFrontiers in plant science · 2022
    Article
  5. Review
  6. Article
  7. Article
  8. Early Detection of Red Palm Weevil,Plants (Basel, Switzerland) · 2021
    Article
  9. In-Field and Early Detection ofFrontiers in plant science · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Antonio GiovinoUnità di Ricerca per il Recupero e la Valorizzazione delle Specie Floricole Mediterranee, Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria Palermo, Italy.
Edoardo BertoliniIstituto di Scienze della Vita, Scuola Superiore Sant'Anna Pisa, Italy.
Veronica FilecciaDipartimento di Scienze Agrarie e Forestali, Università degli Studi di Palermo Palermo, Italy ; Istituto Euromediterraneo di Scienza e Tecnologia Palermo, Italy.
Mohamad Al HassanUniversitat Politècnica de València, Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas (CSIC), Ciudad Politécnica de la Investigación (CPI) Valencia, Spain.
Massimo LabraDipartimento di Biotecnologie e Bioscienze, Università degli Studi di Milano Bicocca Milano, Italy.
Federico MartinelliDipartimento di Scienze Agrarie e Forestali, Università degli Studi di Palermo Palermo, Italy ; Istituto Euromediterraneo di Scienza e Tecnologia Palermo, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledRed Palm Weevil (RPW, Rhynchophorus ferrugineus Olivier) threatens most palm species worldwide. Until now, no studies have analyzed the gene regulatory networks of Phoenix canariensis (Chabaud) in response to RPW attacks. The aim of this study was to fill this knowledge gap. Providing this basic knowledge is very important to improve its management.

resultsA deep transcriptome analysis was performed on fully expanded leaves of healthy non-infested trees and attacked trees at two symptom stages (middle and late infestation). A total of 54 genes were significantly regulated during middle stage. Pathway enrichment analysis showed that phenylpropanoid-related pathways were induced at this stage. More than 3300 genes were affected during late stage of attacks. Higher transcript abundances were observed for lipid fatty acid metabolism (fatty acid and glycerolipids), tryptophan metabolism, phenylpropanoid metabolism. Key RPW-modulated genes involved in innate response mediated by hormone crosstalk were observed belonging to auxin, jasmonate and salicylic acid (SA) pathways. Among transcription factors, some WRKYs were clearly induced. qRT-PCR validation confirmed the upregulation of key genes chosen as validation of transcriptomic analysis.

conclusionA subset of these genes may be further analyzed in future studies to confirm their specificity to be induced by RPW infestations.

Indexed as

genespalmPhoenix canariensisRed Palm WeevilRhynchophorus ferrugineusRNA-seq

Identifiers

PMID26528297
PMCPMC4604324

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.