Evidence map›Paper›PMID 26527800›Full record

ArticleThe Journal of experimental medicine2015

Identification of a novel cis-regulatory element essential for immune tolerance.

Taylor N LaFlam, Grégory Seumois, Corey N Miller, Wint Lwin, Kayla J Fasano, Michael Waterfield, Irina Proekt, Pandurangan Vijayanand, Mark S Anderson

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 56 citations in OpenAlex.

  1. RORγtScience immunology · 2026
    Article
  2. Aire Mutations and Autoimmune Diseases.Advances in experimental medicine and biology · 2025
    Review
  3. Review
  4. A deep intronic splice-alteringScience translational medicine · 2024
    Article
  5. Aire in Autoimmunity.Annual review of immunology · 2024
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Insm1 regulates mTEC development and immune tolerance.Cellular & molecular immunology · 2023
    Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Taylor N LaFlamDiabetes Center, University of California, San Francisco, San Francisco, CA 94143.
Grégory SeumoisLa Jolla Institute for Allergy and Immunology, La Jolla, CA 92037.
Corey N MillerDiabetes Center, University of California, San Francisco, San Francisco, CA 94143.
Wint LwinDiabetes Center, University of California, San Francisco, San Francisco, CA 94143.
Kayla J FasanoDiabetes Center, University of California, San Francisco, San Francisco, CA 94143.
Michael WaterfieldDiabetes Center, University of California, San Francisco, San Francisco, CA 94143.
Irina ProektDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94143.
Pandurangan VijayanandLa Jolla Institute for Allergy and Immunology, La Jolla, CA 92037.
Mark S AndersonDiabetes Center, University of California, San Francisco, San Francisco, CA 94143 manderson@diabetes.ucsf.edu.
University of California, San Francisco · USLa Jolla Institute for Immunology · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007618 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 1985 to 2020
$29.6M
Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GERMAN, MICHAEL S · 2003 to 2019
$21.8M
MOLECULAR AND CELLULAR IMMUNOLOGYT32AI007334 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CYSTER, JASON G · 1988 to 2023
$11.0M
Epigenomics of T cells and innate immune cells in human asthmaR01HL114093 · NHLBI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI ARSHAD, SYED HASAN, PETERS, BJOERN · 2011 to 2020
$8.5M
Child Health Career Development Program at UCSFK12HD072222 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIERO, DONNA M. · 2013 to 2017
$2.0M
Thymic medullary epithelial cell turnover and control of immune toleranceR01AI097457 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 2012 to 2016
$1.9M
Developing eTACs as a Novel Method of Tolerance in Type 1 DiabetesR01DK101622 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 2014 to 2018
$1.7M
Illumina HiSeq 2500 Sequencing SystemS10OD016262 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI RAO, ANJANA · 2013 to 2013
$600k
Deciphering the cis-regulation of Aire expressionF30DK100098 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LAFLAM, TAYLOR NICHOLAS · 2014 to 2015
$72k
NHLBI NIH HHS R01 HL114093NIAID NIH HHS R01 AI097457NIAID NIH HHS T32 AI007334NICHD NIH HHS K12 HD072222NIDDK NIH HHS F30 DK100098NIDDK NIH HHS P30 DK063720NIDDK NIH HHS R01 DK101622NIGMS NIH HHS T32 GM007618NIH HHS S10 OD016262
6 · The paper itself

Abstract

Thymic central tolerance is essential to preventing autoimmunity. In medullary thymic epithelial cells (mTECs), the Autoimmune regulator (Aire) gene plays an essential role in this process by driving the expression of a diverse set of tissue-specific antigens (TSAs), which are presented and help tolerize self-reactive thymocytes. Interestingly, Aire has a highly tissue-restricted pattern of expression, with only mTECs and peripheral extrathymic Aire-expressing cells (eTACs) known to express detectable levels in adults. Despite this high level of tissue specificity, the cis-regulatory elements that control Aire expression have remained obscure. Here, we identify a highly conserved noncoding DNA element that is essential for Aire expression. This element shows enrichment of enhancer-associated histone marks in mTECs and also has characteristics of being an NF-κB-responsive element. Finally, we find that this element is essential for Aire expression in vivo and necessary to prevent spontaneous autoimmunity, reflecting the importance of this regulatory DNA element in promoting immune tolerance.

Indexed as

AIRE ProteinAnimalsBase SequenceDNAEpithelial CellsHEK293 CellsHumansImmune ToleranceMice, Inbred C57BLMice, TransgenicMicroscopy, FluorescenceMolecular Sequence DataNF-kappa BProtein BindingRegulatory Sequences, Nucleic AcidReverse Transcriptase Polymerase Chain ReactionAIRE ProteinDNANF-kappa BTranscription Factors

Identifiers

PMID26527800
PMCPMC4647269
OpenAlexW2177346096

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.