Evidence map›Paper›PMID 26527645›Full record

ArticleJournal of bacteriology2016

AcrB-AcrA Fusion Proteins That Act as Multidrug Efflux Transporters.

Katsuhiko Hayashi, Ryosuke Nakashima, Keisuke Sakurai, Kimie Kitagawa, Seiji Yamasaki, Kunihiko Nishino, Akihito Yamaguchi

Abstract read
In one paragraph

Article in Journal of bacteriology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Acetylome and Succinylome Profiling ofAntibiotics (Basel, Switzerland) · 2022
    Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Katsuhiko HayashiGraduate School of Pharmaceutical Sciences, Osaka University, Suita, Japan The Institute of Scientific and Industrial Research (ISIR), Osaka University, Ibaraki, Osaka, Japan Japan Society for the Promotion of Science, Tokyo, Japan.ORCID http://orcid.org/0000-0001-7359-5939
Ryosuke NakashimaThe Institute of Scientific and Industrial Research (ISIR), Osaka University, Ibaraki, Osaka, Japan CREST, Japan Science and Technology Agency, Saitama, Japan.
Keisuke SakuraiThe Institute of Scientific and Industrial Research (ISIR), Osaka University, Ibaraki, Osaka, Japan CREST, Japan Science and Technology Agency, Saitama, Japan.
Kimie KitagawaThe Institute of Scientific and Industrial Research (ISIR), Osaka University, Ibaraki, Osaka, Japan.
Seiji YamasakiGraduate School of Pharmaceutical Sciences, Osaka University, Suita, Japan The Institute of Scientific and Industrial Research (ISIR), Osaka University, Ibaraki, Osaka, Japan.
Kunihiko NishinoGraduate School of Pharmaceutical Sciences, Osaka University, Suita, Japan The Institute of Scientific and Industrial Research (ISIR), Osaka University, Ibaraki, Osaka, Japan.
Akihito YamaguchiThe Institute of Scientific and Industrial Research (ISIR), Osaka University, Ibaraki, Osaka, Japan CREST, Japan Science and Technology Agency, Saitama, Japan akihito@sanken.osaka-u.ac.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledThe AcrAB-TolC system in Escherichia coli is an intrinsic RND-type multidrug efflux transporter that functions as a tripartite complex of the inner membrane transporter AcrB, the outer membrane channel TolC, and the adaptor protein AcrA. Although the crystal structures of each component of this system have been elucidated, the crystal structure of the whole complex has not been solved. The available crystal structures have shown that AcrB and TolC function as trimers, but the number of AcrA molecules in the complex is now under debate. Disulfide chemical cross-linking experiments have indicated that the stoichiometry of AcrB-AcrA-TolC is 1:1:1; on the other hand, recent cryo-electron microscopy images of AcrAB-TolC suggested a 1:2:1 stoichiometry. In this study, we constructed 1:1-fixed AcrB-AcrA fusion proteins using various linkers. Surprisingly, all the 1:1-fixed linker proteins showed drug export activity under both acrAB-deficient conditions and acrAB acrEF double-pump-knockout conditions regardless of the lengths of the linkers. Finally, we optimized a shorter linker lacking the conformational freedom imparted by the AcrB C terminus. These results suggest that a complex with equal amounts of AcrA and AcrB is sufficient for drug export function. IMPORTANCE: The structure and stoichiometry of the RND-type multidrug exporter AcrB-AcrA-TolC complex are still under debate. Recently, electron microscopic images of the AcrB-AcrA-TolC complex have been reported, suggesting a 1:2:1 stoichiometry. However, we report here that the AcrB-AcrA 1:1 fusion protein is active for drug export under acrAB-deficient conditions and also under acrAB acrEF double-deficient conditions, which eliminate the aid of free AcrA and its close homolog AcrE, indicating that the AcrB-AcrA 1:1 stoichiometry is enough for drug export function. In addition, the AcrB-AcrA fusion protein can function without the aid of free AcrA. We believe that these results are very important for considering the structure and mechanism of AcrAB-TolC-mediated multidrug export.

Indexed as

ATP-Binding Cassette, Sub-Family C ProteinsBacterial Outer Membrane ProteinsBinding SitesComputational BiologyEscherichia coliEscherichia coli ProteinsEthidiumGene DeletionGenes, MDRLipoproteinsMembrane Transport ProteinsPlasmidsProtein BindingProtein ConformationRecombinant Fusion ProteinsAcrA protein, E coliAcrB protein, E coliATP-Binding Cassette, Sub-Family C ProteinsBacterial Outer Membrane ProteinsEscherichia coli ProteinsEthidiumLipoproteinsMembrane Transport ProteinsRecombinant Fusion ProteinstolC protein, E coli

Identifiers

PMID26527645
PMCPMC4751787

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.