ArticleScientific reports2015
Transcriptome analysis of genes involved in defence response in Polyporus umbellatus with Armillaria mellea infection.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed.
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- Acetylome analysis of acetylation providing new insight into sclerotial generation in medicinal fungus Polyporus umbellatus.Scientific reports · 2022Article
- A Mycorrhizal Bacteria Strain Isolated FromFrontiers in plant science · 2022Article
- Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid.Scientific reports · 2021Article
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- Comparative Transcriptome Analysis to Identify Candidate Genes forFrontiers in genetics · 2021Article
- Differences in the Formation Mechanism of Giant Colonies in TwoInternational journal of molecular sciences · 2020Article
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- Transcriptome analysis of postharvest blueberries (Vaccinium corymbosum 'Duke') in response to cold stress.BMC plant biology · 2020Article
- Transcriptomic Analysis Reveals the Roles of Detoxification Systems in Response to Mercury inBiomolecules · 2019Article
- Independent modulation of individual genomic component transcription and a cis-acting element related to high transcriptional activity in a multipartite DNA virus.BMC genomics · 2019Article
- De novo transcriptomic assembly and mRNA expression patterns of Botryosphaeria dothidea infection with mycoviruses chrysovirus 1 (BdCV1) and partitivirus 1 (BdPV1).Virology journal · 2018Article
- Revealing proteins associated with symbiotic germination of Gastrodia elata by proteomic analysis.Botanical studies · 2018Article
- Transcriptomic analyses reveal clathrin-mediated endocytosis involved in symbiotic seed germination of Gastrodia elata.Botanical studies · 2017Article
- Comparative transcriptomic analysis reveals the roles of ROS scavenging genes in response to cadmium in two pak choi cultivars.Scientific reports · 2017Article
- Comparative transcriptome analysis reveals key cadmium transport-related genes in roots of two pak choi (Brassica rapa L. ssp. chinensis) cultivars.BMC genomics · 2017Article
- Draft whole genome sequence of groundnut stem rot fungus Athelia rolfsii revealing genetic architect of its pathogenicity and virulence.Scientific reports · 2017Article
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4 authors.
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Abstract
Polyporus umbellatus, a species symbiotic with Armillaria mellea and it also exhibits substantial defence response to Armillaria mellea infection. There are no genomics resources databases for understanding the molecular mechanism underlying the infection stress of P. umbellatus. Therefore, we performed a large-scale transcriptome sequencing of this fungus with A. mellea infection using Illumina sequencing technology. The assembly of the clean reads resulted in 120,576 transcripts, including 38,444 unigenes. Additionally, we performed a gene expression profiling analysis upon infection treatment. The results indicated significant differences in the gene expression profiles between the control and the infection group. In total, 10933 genes were identified between the two groups. Based on the differentially expressed genes, a Gene Ontology annotation analysis showed many defence-relevant categories. Meanwhile, the Kyoto Encyclopedia of Genes and Genomes pathway analysis uncovered some important pathways. Furthermore, the expression patterns of 13 putative genes that are involved in defence response resulting from quantitative real-time PCR were consistent with their transcript abundance changes as identified by RNA-seq. The sequenced genes covered a considerable proportion of the P. umbellatus transcriptome, and the expression results may be useful to strengthen the knowledge on the defence response of this fungus defend against Armillaria mellea invasion.
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