Evidence map›Paper›PMID 26525784›Full record

ArticleAntimicrobial agents and chemotherapy2016

Analysis of the Structure and Function of FOX-4 Cephamycinase.

S T Lefurgy, V N Malashkevich, J T Aguilan, E Nieves, E C Mundorff, B Biju, M A Noel, R Toro, D Baiwir, K M Papp-Wallace and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Class C β-Lactamases: Molecular Characteristics.Clinical microbiology reviews · 2022
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Frontiers in cellular and infection microbiology · 2018
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

S T LefurgyDepartment of Chemistry, Hofstra University, Hempstead, New York, USA.
V N MalashkevichDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, USA.
J T AguilanDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, USA.
E NievesDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, USA.
E C MundorffDepartment of Chemistry, Hofstra University, Hempstead, New York, USA.
B BijuDepartment of Chemistry, Hofstra University, Hempstead, New York, USA.
M A NoelDepartment of Chemistry, Hofstra University, Hempstead, New York, USA.
R ToroDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, USA.
D BaiwirGIGA Proteomic Facility, Mass Spectrometry Laboratory GIGA-R, Université de Liège, Sart-Tilman, Liège, Belgium.
K M Papp-WallaceResearch Service, Louis Stokes Cleveland Veterans Affairs Medical Center, Cleveland, Ohio, USA Department of Medicine, Case Western Reserve University, Cleveland, Ohio, USA.
S C AlmoDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, USA.
J-M FrereCentre d'Ingénierie des Protéines, Institut de Chimie, Université de Liège, Sart-Tilman, Liège, Belgium.
G BouServicio de Microbiologìa, Complejo Hospitalario Universitario A. Coruña, La Coruña, Spain.
R A BonomoResearch Service, Louis Stokes Cleveland Veterans Affairs Medical Center, Cleveland, Ohio, USA Department of Medicine, Case Western Reserve University, Cleveland, Ohio, USA Department of Pharmacology, Case Western Reserve University, Cleveland, Ohio, USA Department of Molecular Biology and Microbiology, Case Western Reserve University, Cleveland, Ohio, USA Department of Biochemistry, Case Western Reserve University, Cleveland, Ohio, USA robert.bonomo@va.gov.
Albert Einstein College of Medicine · USHofstra University · USUniversity of Liège · BECase Western Reserve University · USComplexo Hospitalario Universitario A Coruña · ESLouis Stokes Cleveland VA Medical Center · US

Funding

The NYSGRC: A Large Scale Center for PSI:BiologyU54GM094662 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI ALMO, STEVEN C. · 2010 to 2014
$32.6M
LTQ Orbitrap Velos Mass Spectrometer SystemS10RR029398 · NCRR · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI ANGELETTI, RUTH HOGUE · 2010 to 2010
$963k
MASS SPECTROMETER SYSTEM: OBESITYS10RR019352 · NCRR · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI ANGELETTI, RUTH HOGUE · 2004 to 2004
$379k
Targeting Burkholderial β-lactamases: Structure, function, and regulationI01BX002872 · VA · LOUIS STOKES CLEVELAND VA MEDICAL CENTER · PI DONSKEY, CURTIS, PAPP-WALLACE, KRISZTINA MARGARET · 2016 to 2023
–
BLRD VA I01 BX002872NCRR NIH HHS 1S10RR019352NCRR NIH HHS 1S10RR029398NCRR NIH HHS S10 RR019352NCRR NIH HHS S10 RR029398NIGMS NIH HHS U54 GM094662
6 · The paper itself

Abstract

Class C β-lactamases poorly hydrolyze cephamycins (e.g., cefoxitin, cefotetan, and moxalactam). In the past 2 decades, a new family of plasmid-based AmpC β-lactamases conferring resistance to cefoxitin, the FOX family, has grown to include nine unique members descended from the Aeromonas caviae chromosomal AmpC. To understand the basis for the unique cephamycinase activity in the FOX family, we determined the first X-ray crystal structures of FOX-4, apo enzyme and the acyl-enzyme with its namesake compound, cefoxitin, using the Y150F deacylation-deficient variant. Notably, recombinant expression of N-terminally tagged FOX-4 also yielded an inactive adenylylated enzyme form not previously observed in β-lactamases. The posttranslational modification (PTM), which occurs on the active site Ser64, would not seem to provide a selective advantage, yet might present an opportunity for the design of novel antibacterial drugs. Substantial ligand-induced changes in the enzyme are seen in the acyl-enzyme complex, particularly the R2 loop and helix H10 (P289 to N297), with movement of F293 by 10.3 Å. Taken together, this study provides the first picture of this highly proficient class C cephamycinase, uncovers a novel PTM, and suggests a possible cephamycin resistance mechanism involving repositioning of the substrate due to the presence of S153P, N289P, and N346I substitutions in the ligand binding pocket.

Indexed as

Aeromonas caviaeAmino Acid SequenceAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasesCefoxitinCrystallography, X-RayDrug Resistance, Multiple, BacterialEscherichia coli ProteinsMicrobial Sensitivity TestsModels, MolecularMolecular Sequence DataProtein IsoformsProtein Processing, Post-TranslationalSequence AlignmentTandem Mass SpectrometryAmpC beta-lactamasesAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasesCefoxitinEscherichia coli Proteinsfox-4 protein, E coliProtein Isoforms

Identifiers

PMID26525784
PMCPMC4750714
OpenAlexW2253505504

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.