Evidence map›Paper›PMID 26525361›Full record

ArticleScientific reports2015

Crude oil as a microbial seed bank with unexpected functional potentials.

Man Cai, Yong Nie, Chang-Qiao Chi, Yue-Qin Tang, Yan Li, Xing-Biao Wang, Ze-Shen Liu, Yunfeng Yang, Jizhong Zhou, Xiao-Lei Wu

Abstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Antibiotics (Basel, Switzerland) · 2024
    Review
  6. Article
  7. Enrichment of microbial consortia for MEOR in crude oil phase of reservoir-produced liquid and their response to environmental disturbance.International microbiology : the official journal of the Spanish Society for Microbiology · 2024
    Article
  8. Bioformulation ofFrontiers in bioengineering and biotechnology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Biology · 2021
    Article
  16. Review
  17. Article
  18. Article
  19. Densely Populated Water Droplets in Heavy-Oil Seeps.Applied and environmental microbiology · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Man CaiPeking University, College of Engineering, Beijing, 100871, China.
Yong NiePeking University, College of Engineering, Beijing, 100871, China.
Chang-Qiao ChiPeking University, College of Engineering, Beijing, 100871, China.
Yue-Qin TangSichuan University, College of Architecture and Environment, Chengdu, 610065, China.
Yan LiPeking University, College of Engineering, Beijing, 100871, China.
Xing-Biao WangPeking University, College of Engineering, Beijing, 100871, China.
Ze-Shen LiuPeking University, College of Engineering, Beijing, 100871, China.
Yunfeng YangTsinghua University, School of Environment, State Key Joint Laboratory of Environment Simulation and Pollution Control, Beijing, 100084, China.
Jizhong ZhouTsinghua University, School of Environment, State Key Joint Laboratory of Environment Simulation and Pollution Control, Beijing, 100084, China.
Xiao-Lei WuPeking University, College of Engineering, Beijing, 100871, China.

Funding

Ethanol and glutamatergic transmission in the dorsal striatumR01AA021505 · NIAAA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WANG, JUN · 2012 to 2016
$1.4M
NIAAA NIH HHS R01 AA021505
6 · The paper itself

Abstract

It was widely believed that oil is a harsh habitat for microbes because of its high toxicity and hydrophobicity. However, accumulating evidence has revealed the presence of live microbes in crude oil. Therefore, it's of value to conduct an in-depth investigation on microbial communities in crude oil. To this end, microorganisms in oil and water phases were collected from four oil-well production mixtures in Qinghai Oilfield, China, and analyzed for their taxonomic and functional compositions via pyrosequencing and GeoChip, respectively. Hierarchical clustering of 16S rRNA gene sequences and functional genes clearly separated crude oil and water phases, suggestive of distinct taxonomic and functional gene compositions between crude oil and water phases. Unexpectedly, Pseudomonas dominated oil phase where diverse functional gene groups were identified, which significantly differed from those in the corresponding water phases. Meanwhile, most functional genes were significantly more abundant in oil phase, which was consistent with their important roles in facilitating survival of their host organisms in crude oil. These findings provide strong evidence that crude oil could be a "seed bank" of functional microorganisms with rich functional potentials. This offers novel insights for industrial applications of microbial-enhanced oil recovery and bioremediation of petroleum-polluted environments.

Indexed as

Water MicrobiologyCluster AnalysisDNA, BacterialOligonucleotide Array Sequence AnalysisPetroleumPhylogenyPseudomonasRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialPetroleumRNA, Ribosomal, 16S

Identifiers

PMID26525361
PMCPMC4630613

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.