Evidence map›Paper›PMID 26523646›Full record

ArticleNature neuroscience2015

Cell type- and brain region-resolved mouse brain proteome.

Kirti Sharma, Sebastian Schmitt, Caroline G Bergner, Stefka Tyanova, Nirmal Kannaiyan, Natalia Manrique-Hoyos, Karina Kongi, Ludovico Cantuti, Uwe-Karsten Hanisch, Mari-Anne Philips and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature neuroscience, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 463 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
463citing papers in PubMed, 2 pooled it
37.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

463 citing papers in PubMed, 2 syntheses or guidelines pooled it, 827 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  19. Review
  20. Article

403 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Kirti SharmaDepartment of Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Martinsried, Germany.
Sebastian SchmittMax Planck Institute of Experimental Medicine, Göttingen, Germany.
Caroline G BergnerMax Planck Institute of Experimental Medicine, Göttingen, Germany.
Stefka TyanovaDepartment of Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Martinsried, Germany.
Nirmal KannaiyanDepartment of Psychiatry, Ludwig-Maximillian University, Munich, Germany.
Natalia Manrique-HoyosMax Planck Institute of Experimental Medicine, Göttingen, Germany.
Karina KongiDepartment of Physiology, Institute of Biomedicine and Translational Medicine, University of Tartu, Estonia.
Ludovico CantutiMax Planck Institute of Experimental Medicine, Göttingen, Germany.
Uwe-Karsten HanischDepartment of Neuropathology, University of Göttingen, Göttingen, Germany.
Mari-Anne PhilipsDepartment of Physiology, Institute of Biomedicine and Translational Medicine, University of Tartu, Estonia.
Moritz J RossnerMax Planck Institute of Experimental Medicine, Göttingen, Germany.
Matthias MannDepartment of Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Martinsried, Germany.
Mikael SimonsMax Planck Institute of Experimental Medicine, Göttingen, Germany.
University of Göttingen · DEMax Planck Institute of Biochemistry · DEMax Planck Institute of Experimental Medicine · DEUniversity of Tartu · EE

Funding

European Research Council 318987European Research Council 647168
6 · The paper itself

Abstract

Brain transcriptome and connectome maps are being generated, but an equivalent effort on the proteome is currently lacking. We performed high-resolution mass spectrometry-based proteomics for in-depth analysis of the mouse brain and its major brain regions and cell types. Comparisons of the 12,934 identified proteins in oligodendrocytes, astrocytes, microglia and cortical neurons with deep sequencing data of the transcriptome indicated deep coverage of the proteome. Cell type-specific proteins defined as tenfold more abundant than average expression represented about a tenth of the proteome, with an overrepresentation of cell surface proteins. To demonstrate the utility of our resource, we focused on this class of proteins and identified Lsamp, an adhesion molecule of the IgLON family, as a negative regulator of myelination. Our findings provide a framework for a system-level understanding of cell-type diversity in the CNS and serves as a rich resource for analyses of brain development and function.

Indexed as

AnimalsBrainHEK293 CellsHumansMaleMiceMice, Inbred C57BLMice, KnockoutNeuronsProteomeProteome

Identifiers

PMID26523646
PMCPMC7116867
OpenAlexW1955394435

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.