Evidence map›Paper›PMID 26520584›Full record

ArticleHearing research2016

Immune defense is the primary function associated with the differentially expressed genes in the cochlea following acoustic trauma.

Shuzhi Yang, Qunfeng Cai, R Robert Vethanayagam, Jianmin Wang, Weiping Yang, Bo Hua Hu

Abstract readComparative Study
In one paragraph

Article in Hearing research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 69 citations in OpenAlex.

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  15. The Genomics of Auditory Function and Disease.Annual review of genomics and human genetics · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Shuzhi YangCenter for Hearing and Deafness, University at Buffalo, NY 14214, USA. Electronic address: qits-002@163.com.
Qunfeng CaiCenter for Hearing and Deafness, University at Buffalo, NY 14214, USA. Electronic address: qunfengcai@gmail.com.
R Robert VethanayagamCenter for Hearing and Deafness, University at Buffalo, NY 14214, USA. Electronic address: rvr@buffalo.edu.
Jianmin WangDepartment of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Elm & Carlton Streets, Buffalo, NY 14263, USA. Electronic address: Jianmin.Wang@RoswellPark.org.
Weiping YangCenter for Hearing and Deafness, University at Buffalo, NY 14214, USA. Electronic address: yangwp301@126.com.
Bo Hua HuCenter for Hearing and Deafness, University at Buffalo, NY 14214, USA. Electronic address: bhu@buffalo.edu.
University at Buffalo, State University of New York · USRoswell Park Comprehensive Cancer Center · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MARK G FRATTINI · 1985 to 2026
$116.6M
Noise-induced acute hair cell DeathR01DC010154 · NIDCD · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI HU, BO HUA · 2010 to 2014
$2.0M
NCI NIH HHS P30 CA016056NIDCD NIH HHS 1R01DC010154NIDCD NIH HHS R01 DC010154
6 · The paper itself

Abstract

Our previous RNA-sequencing analysis of the rat cochlear genes identified multiple biological processes and molecular pathways in the cochlear response to acoustic overstimulation. However, the biological processes and molecular pathways that are common to other species have not been documented. The identification of these common stress processes is pivotal for a better understanding of the essential response of the cochlea to acoustic injury. Here, we compared the RNA-sequencing data collected from mice and rats that sustained a similar, but not identical, acoustic injury. The transcriptome analysis of cochlear genes identified the differentially expressed genes in the mouse and rat samples. Bioinformatics analysis revealed a marked similarity in the changes in the biological processes between the two species, although the differentially expressed genes did not overlap well. The common processes associated with the differentially expressed genes are primarily associated with immunity and inflammation, which include the immune response, response to wounding, the defense response, chemotaxis and inflammatory responses. Moreover, analysis of the molecular pathways showed considerable overlap between the two species. The common pathways include cytokine-cytokine receptor interactions, the chemokine signaling pathway, the Toll-like receptor signaling pathway, and the NOD-like receptor signaling pathway. Further analysis of the transcriptional regulators revealed common upstream regulators of the differentially expressed genes, and these upstream regulators are also functionally related to the immune and inflammatory responses. These results suggest that the immune and inflammatory responses are the essential responses to acoustic overstimulation in the cochlea.

Indexed as

Gene Expression RegulationAnimalsCochleaComputational BiologyDatabases, GeneticDisease Models, AnimalFemaleGene Expression ProfilingHearing Loss, Noise-InducedMaleMice, Inbred CBANoiseRats, Sprague-DawleyRNA, MessengerSequence Analysis, RNATranscriptomeRNA, MessengerInner earNoiseRNA-sequencingTranscriptome

Identifiers

PMID26520584
PMCPMC4798880
OpenAlexW1848888197

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.