Evidence map›Paper›PMID 26518885›Full record

ArticleInternational journal of systematic and evolutionary microbiology2016

The novel extremely acidophilic, cell-wall-deficient archaeon Cuniculiplasma divulgatum gen. nov., sp. nov. represents a new family, Cuniculiplasmataceae fam. nov., of the order Thermoplasmatales.

Olga V Golyshina, Heinrich Lünsdorf, Ilya V Kublanov, Nadine I Goldenstein, Kai-Uwe Hinrichs, Peter N Golyshin

Open access · greenAbstract read
In one paragraph

Article in International journal of systematic and evolutionary microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 101 citations in OpenAlex.

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  6. International journal of systematic and evolutionary microbiology · 2024
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  19. Quantitative Analysis of Core Lipid Production inBioengineering (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Olga V GolyshinaSchool of Biological Sciences, Bangor University, Deiniol Rd, Bangor LL57 2UW, UK.
Heinrich LünsdorfCentral Unit of Microscopy, Helmholtz Centre for Infection Research, Inhoffenstrasse 7, Braunschweig 38124, Germany.
Ilya V KublanovWinogradsky Institute of Microbiology, Russian Academy of Sciences, Prospect 60-Letiya Oktyabrya 7/2, Moscow 117312, Russia.
Nadine I GoldensteinMARUM - Center for Marine Environmental Sciences, University of Bremen, Leobener Str., Bremen 28359, Germany.
Kai-Uwe HinrichsMARUM - Center for Marine Environmental Sciences, University of Bremen, Leobener Str., Bremen 28359, Germany.
Peter N GolyshinSchool of Biological Sciences, Bangor University, Deiniol Rd, Bangor LL57 2UW, UK.
Bangor University · GBUniversity of Bremen · DEHelmholtz Centre for Infection Research · DERussian Academy of Sciences · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two novel cell-wall-less, acidophilic, mesophilic, organotrophic and facultatively anaerobic archaeal strains were isolated from acidic streamers formed on the surfaces of copper-ore-containing sulfidic deposits in south-west Spain and North Wales, UK. Cells of the strains varied from 0.1 to 2 μm in size and were pleomorphic, with a tendency to form filamentous structures. The optimal pH and temperature for growth for both strains were 1.0-1.2 and 37-40 °C, with the optimal substrates for growth being beef extract (3 g l- 1) for strain S5T and beef extract with tryptone (3 and 1 g l- 1, respectively) for strain PM4. The lipid composition was dominated by intact polar lipids consisting of a glycerol dibiphytanyl glycerol tetraether (GDGT) core attached to predominantly glycosidic polar headgroups. In addition, free GDGT and small relative amounts of intact and core diether lipids were present. Strains S5T and PM4 possessed mainly menaquinones with minor fractions of thermoplasmaquinones. The DNA G+C content was 37.3 mol% in strain S5T and 37.16 mol% for strain PM4. A similarity matrix of 16S rRNA gene sequences (identical for both strains) showed their affiliation to the order Thermoplasmatales, with 73.9-86.3 % identity with sequences from members of the order with validly published names. The average nucleotide identity between genomes of the strains determined in silico was 98.75 %, suggesting, together with the 16S rRNA gene-based phylogenetic analysis, that the strains belong to the same species. A novel family, Cuniculiplasmataceae fam. nov., genus Cuniculiplasma gen. nov. and species Cuniculiplasma divulgatum sp. nov. are proposed based on the phylogenetic, chemotaxonomic analyses and physiological properties of the two isolates, S5T and PM4 ( = JCM 30641 = VKM B-2940). The type strain of Cuniculiplasma divulgatum is S5T ( = JCM 30642T = VKM B-2941T).

Indexed as

PhylogenyWater MicrobiologyBase CompositionCell WallDNA, ArchaealLipidsMiningMolecular Sequence DataRNA, Ribosomal, 16SSequence Analysis, DNASpainThermoplasmalesUnited KingdomVitamin K 2DNA, ArchaealLipidsRNA, Ribosomal, 16SVitamin K 2

Identifiers

PMID26518885
PMCPMC4806541
OpenAlexW1840504146

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.