Evidence map›Paper›PMID 26518714›Full record

SynthesisBMC genetics2015

Genetic association meta-analysis: a new classification to assess ethnicity using the association of MCP-1 -2518 polymorphism and tuberculosis susceptibility as a model.

Tania Vásquez-Loarte, Milana Trubnykova, Heinner Guio

Open access · diamondAbstract readMeta-Analysis
In one paragraph

Synthesis in BMC genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Tania Vásquez-LoarteLaboratorio de Biotecnología y Biología Molecular, Instituto Nacional de Salud, Avenida Defensores del, Morro 2268, Lima 9, Peru. taniavasquezloarte@gmail.com.
Milana TrubnykovaLaboratorio de Biotecnología y Biología Molecular, Instituto Nacional de Salud, Avenida Defensores del, Morro 2268, Lima 9, Peru. mamimafa@yahoo.mx.
Heinner GuioLaboratorio de Biotecnología y Biología Molecular, Instituto Nacional de Salud, Avenida Defensores del, Morro 2268, Lima 9, Peru. heinnerguio@gmail.com.
Instituto Nacional de Salud · PE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn meta-analyses of genetic association studies, ancestry and ethnicity are not accurately investigated. Ethnicity is usually classified using conventional race/ethnic categories or continental groupings even though they could introduce bias increasing heterogeneity between and within studies; thus decreasing the external validity of the results. In this study, we performed a meta-analysis using a novel ethnic classification system to test the association between MCP-1 -2518 polymorphism and pulmonary tuberculosis. Our new classification considers genetic distance, migration and linguistic origins, which will increase homogeneity within ethnic groups.

methodsWe included thirteen studies from three continents (Asia, Africa and Latin America) and considered seven ethnic groups (West Africa, South Africa, Saharan Africa, East Asia, South Asia, Persia and Latin America).

resultsThe results were compared to the continental group classification. We found a significant association between MCP-1 -2518 polymorphism and TB susceptibility only in the East Asian and Latin American groups (OR 3.47, P = 0.08; OR 2.73, P = 0.02). This association is not observed in other ethnic groups that are usually considered in the Asian group, such as India and Persia, or in the African group.

conclusionsThere is an association between MCP-1 -2518 polymorphism and TB susceptibility only in the East Asian and Latin American groups. We suggest the use of our new ethnic classification in future meta-analysis of genetic association studies when ancestry markers are not available. This new classification increases homogeneity for certain ethnic groups compared to the continental classification. We recommend considering previous data about migration, linguistics and genetic distance when classifying ethnicity in further studies.

Indexed as

Genetic Association StudiesGenetic Predisposition to DiseaseModels, GeneticAdultAllelesChemokine CCL2EthnicityFemaleGene FrequencyGenetic HeterogeneityGeographyHumansMaleMiddle AgedPolymorphism, Single NucleotidePublication BiasCCL2 protein, humanChemokine CCL2

Identifiers

PMID26518714
PMCPMC4627623
OpenAlexW1922320559

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.