Evidence map›Paper›PMID 26518637›Full record

ArticleMolecular nutrition & food research2016

The effects of omega-3 polyunsaturated fatty acids and genetic variants on methylation levels of the interleukin-6 gene promoter.

Yiyi Ma, Caren E Smith, Chao-Qiang Lai, Marguerite R Irvin, Laurence D Parnell, Yu-Chi Lee, Lucia D Pham, Stella Aslibekyan, Steven A Claas, Michael Y Tsai and 5 more

Open access · greenAbstract read
In one paragraph

Article in Molecular nutrition & food research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 41 citations in OpenAlex.

  1. Trial
  2. Review
  3. Fatty acids and epigenetics in health and diseases.Food science and biotechnology · 2024
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
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  14. Article
  15. Epigenetic DNA Methylation MediatingFrontiers in physiology · 2017
    Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 2 countries.

Yiyi MaJean Mayer US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA, USA.
Caren E SmithJean Mayer US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA, USA.
Chao-Qiang LaiJean Mayer US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA, USA.
Marguerite R IrvinDepartment of Epidemiology, University of Alabama at Birmingham, Birmingham, AL, USA.
Laurence D ParnellJean Mayer US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA, USA.
Yu-Chi LeeJean Mayer US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA, USA.
Lucia D PhamJean Mayer US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA, USA.
Stella AslibekyanDepartment of Epidemiology, University of Alabama at Birmingham, Birmingham, AL, USA.
Steven A ClaasDepartment of Epidemiology, University of Alabama at Birmingham, Birmingham, AL, USA.
Michael Y TsaiDepartment of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN, USA.
Ingrid B BoreckiDepartment of Genetics, Washington University School of Medicine, St. Louis, MO, USA.
Edmond K KabagambeDepartment of Medicine, Vanderbilt University, Nashville, TN, USA.
José M OrdovásJean Mayer US Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, MA, USA.
Devin M AbsherHudson Alpha Institute for Biotechnology, Huntsville, AL, USA.
Donna K ArnettDepartment of Epidemiology, University of Alabama at Birmingham, Birmingham, AL, USA.
Jean Mayer Human Nutrition Research Center on Aging · USUniversity of Alabama at Birmingham · USTufts University · USBoston University · USHudsonAlpha Institute for Biotechnology · USUniversity of Minnesota · USVanderbilt University · USWashington University in St. Louis · US

Funding

University of Alabama at Birmingham's Diabetes Research CenterP30DK079626 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Kirk Michael Habegger · 2013 to 2026
$19.5M
Genetic and Environmental Determinants of TriglyceridesU01HL072524 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI ARNETT, DONNA K · 2002 to 2008
$11.9M
Epigenetic Determinants of Lipid Response to Dietary Fat and FenofibrateR01HL104135 · NHLBI · UNIVERSITY OF KENTUCKY · PI ARNETT, DONNA K · 2010 to 2015
$5.5M
UAB Pre and Post-Doctoral Training Program in BiostatisticsT32NS054584 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI CUTTER, GARY R · 2007 to 2011
$765k
Genetic predictors of metabolic responses to dairyK08HL112845 · NHLBI · TUFTS UNIVERSITY BOSTON · PI SMITH, CAREN ELIZABETH · 2013 to 2017
$474k
NHLBI NIH HHS 5R01HL1043135-04NHLBI NIH HHS K08 HL112845NHLBI NIH HHS R01 HL104135NHLBI NIH HHS U01 HL072524NHLBI NIH HHS U01HL072524-04NIDDK NIH HHS P30 DK079626NINDS NIH HHS T32 NS054584NINDS NIH HHS T32NS054584
6 · The paper itself

Abstract

scopeOmega-3 PUFAs (n-3 PUFAs) reduce IL-6 gene expression, but their effects on transcription regulatory mechanisms are unknown. We aimed to conduct an integrated analysis with both population and in vitro studies to systematically explore the relationships among n-3 PUFA, DNA methylation, single nucleotide polymorphisms (SNPs), gene expression, and protein concentration of IL6. METHODS AND

resultsUsing data in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN) study and the Encyclopedia of DNA Elements (ENCODE) consortium, we found that higher methylation of IL6 promoter cg01770232 was associated with higher IL-6 plasma concentration (p = 0.03) and greater IL6 gene expression (p = 0.0005). Higher circulating total n-3 PUFA was associated with lower cg01770232 methylation (p = 0.007) and lower IL-6 concentration (p = 0.02). Moreover, an allele of IL6 rs2961298 was associated with higher cg01770232 methylation (p = 2.55 × 10(-7) ). The association between n-3 PUFA and cg01770232 methylation was dependent on rs2961298 genotype (p = 0.02), but higher total n-3 PUFA was associated with lower cg01770232 methylation in the heterozygotes (p = 0.04) not in the homozygotes.

conclusionHigher n-3 PUFA is associated with lower methylation at IL6 promoter, which may be modified by IL6 SNPs.

Indexed as

Polymorphism, Single NucleotideAdultCpG IslandsDNA MethylationFatty Acids, Omega-3FemaleHumansInterleukin-6MaleMiddle AgedPromoter Regions, GeneticFatty Acids, Omega-3IL6 protein, humanInterleukin-6DNA methylationGene-by-environment interactionGenetic variantInterleukin-6n-3 polyunsaturated fatty acids

Identifiers

PMID26518637
PMCPMC4844557
OpenAlexW1872470270

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.