Evidence map›Paper›PMID 26518632›Full record

ArticleNeuroImage2016

Time-dependence of graph theory metrics in functional connectivity analysis.

Sharon Chiang, Alberto Cassese, Michele Guindani, Marina Vannucci, Hsiang J Yeh, Zulfi Haneef, John M Stern

Abstract read
In one paragraph

Article in NeuroImage, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
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  5. Identification of Pattern Completion Neurons in Neuronal Ensembles Using Probabilistic Graphical Models.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  6. Dynamic functional connectivity in temporal lobe epilepsy: a graph theoretical and machine learning approach.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2021
    Article
  7. Article
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  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sharon ChiangDepartment of Statistics, Rice University, Houston, TX, USA. Electronic address: sc4712@rice.com.
Alberto CasseseDepartment of Statistics, Rice University, Houston, TX, USA; Department of Biostatistics, University of Texas at MD Anderson Cancer Center, Houston, TX, USA; Department of Methodology and Statistics, Maastricht University, Maastricht, The Netherlands.
Michele GuindaniDepartment of Statistics, Rice University, Houston, TX, USA; Department of Biostatistics, University of Texas at MD Anderson Cancer Center, Houston, TX, USA.
Marina VannucciDepartment of Statistics, Rice University, Houston, TX, USA.
Hsiang J YehDepartment of Neurology, University of California Los Angeles, Los Angeles, CA, USA.
Zulfi HaneefDepartment of Neurology, Baylor College of Medicine, Houston, TX, USA; Neurology Care Line, Michael E. DeBakey VA Medical Center, Houston, TX, USA.
John M SternDepartment of Neurology, University of California Los Angeles, Los Angeles, CA, USA.

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
TRAINING PROGRAM IN COMPUTATIONAL BIOLOGY AND MEDICINET15LM007093 · NLM · RICE UNIVERSITY · PI Lydia E. Kavraki · 1992 to 2026
$20.8M
Training Program in Biostatistics for Cancer ResearchT32CA096520 · NCI · RICE UNIVERSITY · PI KIMMEL, MAREK, YUAN, YING · 2003 to 2023
$4.5M
Simutaneous fMRI and EEG of Epileptogenic Brain RegionsK23NS044936 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI STERN, JOHN M · 2004 to 2008
$807k
NCI NIH HHS 5T32-CA096520-07NCI NIH HHS P30 CA016672NCI NIH HHS P30-CA016672NCI NIH HHS T32 CA096520NINDS NIH HHS K23 NS044936NLM NIH HHS 2T15-LM007093-21NLM NIH HHS T15 LM007093
6 · The paper itself

Abstract

Brain graphs provide a useful way to computationally model the network structure of the connectome, and this has led to increasing interest in the use of graph theory to quantitate and investigate the topological characteristics of the healthy brain and brain disorders on the network level. The majority of graph theory investigations of functional connectivity have relied on the assumption of temporal stationarity. However, recent evidence increasingly suggests that functional connectivity fluctuates over the length of the scan. In this study, we investigate the stationarity of brain network topology using a Bayesian hidden Markov model (HMM) approach that estimates the dynamic structure of graph theoretical measures of whole-brain functional connectivity. In addition to extracting the stationary distribution and transition probabilities of commonly employed graph theory measures, we propose two estimators of temporal stationarity: the S-index and N-index. These indexes can be used to quantify different aspects of the temporal stationarity of graph theory measures. We apply the method and proposed estimators to resting-state functional MRI data from healthy controls and patients with temporal lobe epilepsy. Our analysis shows that several graph theory measures, including small-world index, global integration measures, and betweenness centrality, may exhibit greater stationarity over time and therefore be more robust. Additionally, we demonstrate that accounting for subject-level differences in the level of temporal stationarity of network topology may increase discriminatory power in discriminating between disease states. Our results confirm and extend findings from other studies regarding the dynamic nature of functional connectivity, and suggest that using statistical models which explicitly account for the dynamic nature of functional connectivity in graph theory analyses may improve the sensitivity of investigations and consistency across investigations.

Indexed as

AdultAlgorithmsBayes TheoremBrainConnectomeEpilepsy, Temporal LobeFemaleHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingMaleMarkov ChainsMiddle AgedNeural PathwaysYoung AdultDynamic functional connectivityFunctional magnetic resonance imagingGraph theoryHidden Markov ModelTemporal lobe epilepsy

Identifiers

PMID26518632
PMCPMC4895125

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.