Evidence map›Paper›PMID 26518264›Full record

ArticleThe Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases

Influence of microbiome species in hard-to-heal wounds on disease severity and treatment duration.

Dagmar Chudobova, Kristyna Cihalova, Roman Guran, Simona Dostalova, Kristyna Smerkova, Radek Vesely, Jaromir Gumulec, Michal Masarik, Zbynek Heger, Vojtech Adam and 1 more

Abstract read
In one paragraph

Article in The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Opportunities and obstacles for deep learning in biology and medicine.Journal of the Royal Society, Interface · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Dagmar ChudobovaDepartment of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska, Czech Republic; Central European Institute of Technology, Brno University of Technology, Technicka, Czech Republic.
Kristyna CihalovaDepartment of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska, Czech Republic; Central European Institute of Technology, Brno University of Technology, Technicka, Czech Republic.
Roman GuranDepartment of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska, Czech Republic; Central European Institute of Technology, Brno University of Technology, Technicka, Czech Republic.
Simona DostalovaDepartment of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska, Czech Republic; Central European Institute of Technology, Brno University of Technology, Technicka, Czech Republic.
Kristyna SmerkovaDepartment of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska, Czech Republic; Central European Institute of Technology, Brno University of Technology, Technicka, Czech Republic.
Radek VeselyDepartment of Traumatology at the Medical Faculty, Masaryk University and Trauma Hospital of Brno, Ponavka, Czech Republic.
Jaromir GumulecDepartment of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska, Czech Republic; Department of Pathological Physiology, Faculty of Medicine, Masaryk University, Kamenice, Czech Republic.
Michal MasarikDepartment of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska, Czech Republic; Department of Pathological Physiology, Faculty of Medicine, Masaryk University, Kamenice, Czech Republic.
Zbynek HegerDepartment of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska, Czech Republic; Central European Institute of Technology, Brno University of Technology, Technicka, Czech Republic.
Vojtech AdamDepartment of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska, Czech Republic; Central European Institute of Technology, Brno University of Technology, Technicka, Czech Republic.
Rene KizekDepartment of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska, Czech Republic; Central European Institute of Technology, Brno University of Technology, Technicka, Czech Republic. Electronic address: kizek@sci.muni.cz.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundInfections, mostly those associated with colonization of wound by different pathogenic microorganisms, are one of the most serious health complications during a medical treatment. Therefore, this study is focused on the isolation, characterization, and identification of microorganisms prevalent in superficial wounds of patients (n=50) presenting with bacterial infection.

methodsAfter successful cultivation, bacteria were processed and analyzed. Initially the identification of the strains was performed through matrix-assisted laser desorption/ionization time-of-flight mass spectrometry based on comparison of protein profiles (2-30kDa) with database. Subsequently, bacterial strains from infected wounds were identified by both matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and sequencing of 16S rRNA gene 108.

resultsThe most prevalent species was Staphylococcus aureus (70%), and out of those 11% turned out to be methicillin-resistant (mecA positive). Identified strains were compared with patients' diagnoses using the method of artificial neuronal network to assess the association between severity of infection and wound microbiome species composition. Artificial neuronal network was subsequently used to predict patients' prognosis (n=9) with 85% success.

conclusionsIn all of 50 patients tested bacterial infections were identified. Based on the proposed artificial neuronal network we were able to predict the severity of the infection and length of the treatment.

Indexed as

MicrobiotaAdultAgedAged, 80 and overBacterial Typing TechniquesFemaleHumansMaleMiddle AgedNeural Networks, ComputerPhylogenyRNA, Ribosomal, 16SSeverity of Illness IndexTime FactorsWound InfectionYoung AdultRNA, Ribosomal, 16SBacterial strainsMALDI-TOFSequencingSuperficial wounds

Identifiers

PMID26518264
PMCPMC9425364

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.