Evidence map›Paper›PMID 26516405›Full record

ArticleStandards in genomic sciences2015

High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237.

Anne Fischer, Ivette Santana-Cruz, Jan Hegerman, Hadrien Gourlé, Elise Schieck, Mathieu Lambert, Suvarna Nadendla, Hezron Wesonga, Rachel A Miller, Sanjay Vashee and 4 more

Abstract readCase Reports
In one paragraph

Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. iScience · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Host-Pathogen Interactions ofPathogens (Basel, Switzerland) · 2019
    Article
  8. Article
  9. Article
  10. Article
  11. High quality draft genome sequence ofStandards in genomic sciences · 2018
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Anne FischerInternational Livestock Research Institute, PO Box 30709, 00100 Nairobi, Kenya ; International Centre for Insect Physiology and Ecology, PO Box 30772, 00100 Nairobi, Kenya.
Ivette Santana-CruzInstitute for Genome Sciences, University of Maryland School of Medicine, 801 W. Baltimore Street BioPark II, 21201 Baltimore, MD USA.
Jan HegermanInstitute of Functional and Applied Anatomy, Hannover Medical School, Hannover, Germany ; Biomedical Research in Endstage and Obstructive Lung Disease Hannover (BREATH), Member of the German Center for Lung Research (DZL), Hannover, Germany ; REBIRTH Cluster of Excellence, Hannover, Germany.
Hadrien GourléDepartment of Animal Breeding and Genetics, SLU Global Bioinformatics Centre, Swedish University of Agricultural Sciences, SE75007 Uppsala, Sweden.
Elise SchieckInternational Livestock Research Institute, PO Box 30709, 00100 Nairobi, Kenya.
Mathieu LambertDepartment of Animal Breeding and Genetics, SLU Global Bioinformatics Centre, Swedish University of Agricultural Sciences, SE75007 Uppsala, Sweden.
Suvarna NadendlaInstitute for Genome Sciences, University of Maryland School of Medicine, 801 W. Baltimore Street BioPark II, 21201 Baltimore, MD USA.
Hezron WesongaKenya Agricultural and Livestock Research Organization (KALRO) Muguga, PO Box 32-00902, Kikuyu, Kenya.
Rachel A MillerInternational Livestock Research Institute, PO Box 30709, 00100 Nairobi, Kenya ; Department of Food Science, Cornell University, Ithaca, NY USA.
Sanjay VasheeJ. Craig Venter Institute, 9704 Medical Center Drive, 20850 Rockville, MD USA.
Johann WeberLausanne Genomic Technologies Facility Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.
Jochen MeensInstitute for Microbiology, Department of Infectious Diseases, University of Veterinary Medicine Hannover, Hannover, Germany.
Joachim FreyInstitute of Veterinary Bacteriology, University of Bern, CH-3001 Bern, Switzerland.
Joerg JoresInternational Livestock Research Institute, PO Box 30709, 00100 Nairobi, Kenya ; Institute of Veterinary Bacteriology, University of Bern, CH-3001 Bern, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the Mycoplasma mycoides cluster' represent important livestock pathogens worldwide. Mycoplasma mycoides subsp. mycoides is the etiologic agent of contagious bovine pleuropneumonia (CBPP), which is still endemic in many parts of Africa. We report the genome sequences and annotation of two frequently used challenge strains of Mycoplasma mycoides subsp. mycoides, Afadé and B237. The information provided will enable downstream 'omics' applications such as proteomics, transcriptomics and reverse vaccinology approaches. Despite the absence of Mycoplasma pneumoniae like cyto-adhesion encoding genes, the two strains showed the presence of protrusions. This phenotype is likely encoded by another set of genes.

Indexed as

Challenge strainContagious bovine pleuropneumoniaGenomeMycoplasma mycoides subsp. mycoidesProtrusion

Identifiers

PMID26516405
PMCPMC4625578

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.