Evidence map›Paper›PMID 26516126›Full record

ArticleJournal of experimental botany2016

Modulation of copper deficiency responses by diurnal and circadian rhythms in Arabidopsis thaliana.

Ana Perea-García, Amparo Andrés-Bordería, Sonia Mayo de Andrés, Amparo Sanz, Amanda M Davis, Seth J Davis, Peter Huijser, Lola Peñarrubia

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
7.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 4 countries.

Ana Perea-GarcíaDepartament de Bioquímica i Biologia Molecular, Universitat de València, Av. Doctor Moliner, 50, ES-46100 Burjassot, Valencia, Spain * Present address: IIB-INTECh UNSAM-CONICET CC 164 (7130), Chascomús, Argentina.
Amparo Andrés-BorderíaDepartament de Bioquímica i Biologia Molecular, Universitat de València, Av. Doctor Moliner, 50, ES-46100 Burjassot, Valencia, Spain.
Sonia Mayo de AndrésDepartament de Bioquímica i Biologia Molecular, Universitat de València, Av. Doctor Moliner, 50, ES-46100 Burjassot, Valencia, Spain Present address: Unidad de Genética y Diagnóstico Prenatal, Hospital Universitario y Politécnico La Fe, Av. Campanar 21, ES-46009 Valencia, Spain.
Amparo SanzDepartament de Biologia Vegetal, Universitat de València, Av. Doctor Moliner, 50, ES-46100 Burjassot, Valencia, Spain.
Amanda M DavisDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829 Cologne, Germany Department of Biology, University of York, UK.
Seth J DavisDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829 Cologne, Germany Department of Biology, University of York, UK.
Peter HuijserDepartment of Comparative Development and Genetics, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829 Cologne, Germany.
Lola PeñarrubiaDepartament de Bioquímica i Biologia Molecular, Universitat de València, Av. Doctor Moliner, 50, ES-46100 Burjassot, Valencia, Spain penarrub@uv.es.
Universitat de València · ESMax Planck Institute for Plant Breeding Research · DEHospital Universitari i Politècnic La Fe · ESNational University of General San Martín · ARUniversity of York · GB

Funding

Biotechnology and Biological Sciences Research Council BB/M000435/1
6 · The paper itself

Abstract

Copper homeostasis under deficiency is regulated by the SQUAMOSA PROMOTER BINDING PROTEIN-LIKE7 (SPL7) transcription factor. The daily oscillating expression of two SPL7-dependent copper deficiency markers, COPPER TRANSPORTER (COPT2) and IRON SUPEROXIDE DISMUTASE (FSD1), has been followed by quantitative PCR and in promoter:LUCIFERASE transgenic plants. Both genes showed circadian and diurnal regulation. Under copper deficiency, their expression decreased drastically in continuous darkness. Accordingly, total copper content was slightly reduced in etiolated seedlings under copper deficiency. The expression of SPL7 and its targets COPT2 and FSD1 was differently regulated in various light signalling mutants. On the other hand, increased copper levels reduced the amplitude of nuclear circadian clock components, such as GIGANTEA (GI). The alteration of copper homeostasis in the COPT1 overexpression line and spl7 mutants also modified the amplitude of a classical clock output, namely the circadian oscillation of cotyledon movements. In the spl7 mutant, the period of the oscillation remained constant. These results suggest a feedback of copper transport on the circadian clock and the integration of rhythmic copper homeostasis into the central oscillator of plants.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsCation Transport ProteinsCircadian RhythmCopperDNA-Binding ProteinsHomeostasisPlants, Genetically ModifiedSLC31 ProteinsSuperoxide DismutaseTranscription FactorsArabidopsis ProteinsCation Transport ProteinsCopperCOPT2 protein, ArabidopsisDNA-Binding ProteinsSLC31 ProteinsSPL7 protein, ArabidopsisSuperoxide DismutaseTranscription FactorsArabidopsis thalianacircadian clockcopper deficiencycopper transportdiurnal rhythmheavy metals.

Identifiers

PMID26516126
PMCPMC4682440
OpenAlexW2221217748

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.