Evidence map›Paper›PMID 26516084›Full record

ArticleRNA (New York, N.Y.)2015

An extensive allelic series of Drosophila kae1 mutants reveals diverse and tissue-specific requirements for t6A biogenesis.

Ching-Jung Lin, Peter Smibert, Xiaoyu Zhao, Jennifer F Hu, Johnny Ramroop, Stefanie M Kellner, Matthew A Benton, Shubha Govind, Peter C Dedon, Rolf Sternglanz and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. RNA modifications in insects.Frontiers in insect science · 2024
    Review
  7. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  8. Article
  9. Conservation and Diversification of tRNA tInternational journal of molecular sciences · 2022
    Review
  10. Nuclear Functions of KaeA, a Subunit of the KEOPS Complex inInternational journal of molecular sciences · 2022
    Article
  11. Article
  12. Article
  13. Review
  14. Elongator Subunit 3 (Elp3) Is Required for Zebrafish Trunk Development.International journal of molecular sciences · 2020
    Article
  15. The tRNA biology · 2018
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Ching-Jung LinDepartment of Developmental Biology, Sloan-Kettering Institute, New York, New York 10065, USA.
Peter SmibertDepartment of Developmental Biology, Sloan-Kettering Institute, New York, New York 10065, USA Research School of Biological Sciences, The Australian National University, Acton ACT 2601, Australia.
Xiaoyu ZhaoDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York 11794, USA.
Jennifer F HuDepartment of Biological Engineering, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts 02139, USA.
Johnny RamroopDepartment of Biology, The City College of the City University of New York, New York 10031, USA The Graduate Center of the City University of New York, New York 10016, USA.
Stefanie M KellnerDepartment of Biological Engineering, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts 02139, USA.
Matthew A BentonResearch School of Biological Sciences, The Australian National University, Acton ACT 2601, Australia.
Shubha GovindDepartment of Biology, The City College of the City University of New York, New York 10031, USA The Graduate Center of the City University of New York, New York 10016, USA.
Peter C DedonDepartment of Biological Engineering, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts 02139, USA.
Rolf SternglanzDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York 11794, USA.
Eric C LaiDepartment of Developmental Biology, Sloan-Kettering Institute, New York, New York 10065, USA.
Massachusetts Institute of Technology · USAustralian National University · AUKettering University · USStony Brook University · USThe Graduate Center, CUNY · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LEVINE, STUART S · 1985 to 2020
$25.6M
Selective regulatory and biogenesis mechanisms for microRNAsR01GM083300 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI Eric C Lai · 2007 to 2026
$9.8M
Wiring of Gene Expression in the Early Meiotic ProgramP01GM088297 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI HOLLINGSWORTH, NANCY M. · 2010 to 2014
$7.4M
Mechanism and regulation of Hu family RNA binding proteins during neural alternative polyadenylationR01NS083833 · NINDS · SLOAN-KETTERING INST CAN RESEARCH · PI LAI, ERIC C · 2014 to 2023
$5.4M
RNA Modifications as Biomarkers of Environmental Stress and InflammationR01ES017010 · NIEHS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI BEGLEY, THOMAS J · 2009 to 2013
$2.1M
Quantitative analysis of damage to the nucleotide poolR21ES022858 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI DEDON, PETER C · 2014 to 2015
$429k
NCI NIH HHS P30 CA008748NCI NIH HHS P30-CA008748NIEHS NIH HHS ES002109NIEHS NIH HHS ES017010NIEHS NIH HHS ES022858NIEHS NIH HHS P30 ES002109NIEHS NIH HHS R01 ES017010NIEHS NIH HHS R21 ES022858NIGMS NIH HHS P01 GM088297NIGMS NIH HHS P01-GM088297NIGMS NIH HHS R01 GM083300NIGMS NIH HHS R01-GM083300NINDS NIH HHS R01 NS083833NINDS NIH HHS R01-NS083833
6 · The paper itself

Abstract

N(6)-threonylcarbamoyl-adenosine (t6A) is one of the few RNA modifications that is universally present in life. This modification occurs at high frequency at position 37 of most tRNAs that decode ANN codons, and stabilizes cognate anticodon-codon interactions. Nearly all genetic studies of the t6A pathway have focused on single-celled organisms. In this study, we report the isolation of an extensive allelic series in the Drosophila ortholog of the core t6A biosynthesis factor Kae1. kae1 hemizygous larvae exhibit decreases in t6A that correlate with allele strength; however, we still detect substantial t6A-modified tRNAs even during the extended larval phase of null alleles. Nevertheless, complementation of Drosophila Kae1 and other t6A factors in corresponding yeast null mutants demonstrates that these metazoan genes execute t6A synthesis. Turning to the biological consequences of t6A loss, we characterize prominent kae1 melanotic masses and show that they are associated with lymph gland overgrowth and ectopic generation of lamellocytes. On the other hand, kae1 mutants exhibit other phenotypes that reflect insufficient tissue growth. Interestingly, whole-tissue and clonal analyses show that strongly mitotic tissues such as imaginal discs are exquisitely sensitive to loss of kae1, whereas nonproliferating tissues are less affected. Indeed, despite overt requirements of t6A for growth of many tissues, certain strong kae1 alleles achieve and sustain enlarged body size during their extended larval phase. Our studies highlight tissue-specific requirements of the t6A pathway in a metazoan context and provide insights into the diverse biological roles of this fundamental RNA modification during animal development and disease.

Indexed as

AdenosineAllelesAmino Acid SequenceAnimalsBiosynthetic PathwaysConserved SequenceDrosophila melanogasterDrosophila ProteinsFemaleGenetic Complementation TestImaginal DiscsLarvaMaleMitosisMolecular Sequence DataMutationAdenosineDrosophila ProteinsN(6)-(N-threonylcarbonyl)adenosineDrosophilaKae1N6-threonylcarbamoyladenosinet6A

Identifiers

PMID26516084
PMCPMC4647464
OpenAlexW1830953352

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.