Evidence map›Paper›PMID 26516065›Full record

ArticleCancer discovery2015

Convergence of Acquired Mutations and Alternative Splicing of CD19 Enables Resistance to CART-19 Immunotherapy.

Elena Sotillo, David M Barrett, Kathryn L Black, Asen Bagashev, Derek Oldridge, Glendon Wu, Robyn Sussman, Claudia Lanauze, Marco Ruella, Matthew R Gazzara and 20 more

Open access · greenAbstract read
In one paragraph

Article in Cancer discovery, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 805 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
805citing papers in PubMed, 2 pooled it
34.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

805 citing papers in PubMed, 2 syntheses or guidelines pooled it, 1,229 citations in OpenAlex.

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745 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 2 institutions in 1 country.

Elena SotilloDivision of Cancer Pathobiology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
David M BarrettDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Kathryn L BlackDivision of Cancer Pathobiology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Asen BagashevDivision of Cancer Pathobiology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Derek OldridgeDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Glendon WuDivision of Cancer Pathobiology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania. Immunology Graduate Group, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
Robyn SussmanDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Claudia LanauzeDivision of Cancer Pathobiology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania. Cell & Molecular Biology Graduate Group, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
Marco RuellaCenter for Cellular Immunotherapies, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
Matthew R GazzaraDepartment of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania. Department of Biochemistry & Biophysics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
Nicole M MartinezDepartment of Biochemistry & Biophysics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
Colleen T HarringtonDivision of Cancer Pathobiology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania. Cell & Molecular Biology Graduate Group, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
Elaine Y ChungDivision of Cancer Pathobiology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Jessica PerazzelliDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Ted J HofmannDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Shannon L MaudeDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Pichai RamanDivision of Cancer Pathobiology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania. Division of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Alejandro BarreraDepartment of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
Saar GillCenter for Cellular Immunotherapies, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania. Department of Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
Simon F LaceyDepartment of Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
Jan J MelenhorstDepartment of Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
David AllmanDepartment of Pathology & Laboratory Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
Elad JacobyPediatric Oncology Branch, National Cancer Institute, Bethesda, Maryland.
Terry FryPediatric Oncology Branch, National Cancer Institute, Bethesda, Maryland.
Crystal MackallPediatric Oncology Branch, National Cancer Institute, Bethesda, Maryland.
Yoseph BarashDepartment of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
Kristen W LynchDepartment of Biochemistry & Biophysics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania.
John M MarisDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Stephan A GruppDivision of Oncology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Andrei Thomas-TikhonenkoDivision of Cancer Pathobiology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania. Immunology Graduate Group, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania. Cell & Molecular Biology Graduate Group, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania. Department of Pathology & Laboratory Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania. andreit@mail.med.upenn.edu.
Children's Hospital of Philadelphia · USUniversity of Pennsylvania · US

Funding

HEMATOLOGY CLINICAL RESEARCH TRAINING PROGRAMT32HL007439 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI LAWRENCE F BRASS, PETER S KLEIN · 1985 to 2026
$17.1M
TRAINING PROGRAM IN CELL AND MOLECULAR BIOLOGYT32GM007229 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S. · 1985 to 2023
$14.0M
Training Program in Computational GenomicsT32HG000046 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI JUNHYONG KIM, Mingyao Li · 1999 to 2026
$9.5M
Modeling Splicing in normal tissues and neurodegenerative diseaseR01AG046544 · NIA · UNIVERSITY OF PENNSYLVANIA · PI BARASH, YOSEPH · 2014 to 2018
$1.6M
Interplay between Pax5 and Myc in B-lymphomagenesisR01CA102709 · NCI · UNIVERSITY OF PENNSYLVANIA · PI THOMAS-TIKHONENKO, ANDREI · 2003 to 2006
$1.2M
Investigating non-coding mechanisms of functional dysregulation in neuroblastomaF30CA192831 · NCI · UNIVERSITY OF PENNSYLVANIA · PI OLDRIDGE, DEREK · 2015 to 2016
$57k
NCI NIH HHS F30 CA192831NCI NIH HHS R01 CA102709NHGRI NIH HHS T32 HG000046NHLBI NIH HHS T32 HL007439NIA NIH HHS R01 AG046544NIGMS NIH HHS T32 GM007229
6 · The paper itself

Abstract

unlabelledThe CD19 antigen, expressed on most B-cell acute lymphoblastic leukemias (B-ALL), can be targeted with chimeric antigen receptor-armed T cells (CART-19), but relapses with epitope loss occur in 10% to 20% of pediatric responders. We detected hemizygous deletions spanning the CD19 locus and de novo frameshift and missense mutations in exon 2 of CD19 in some relapse samples. However, we also discovered alternatively spliced CD19 mRNA species, including one lacking exon 2. Pull-down/siRNA experiments identified SRSF3 as a splicing factor involved in exon 2 retention, and its levels were lower in relapsed B-ALL. Using genome editing, we demonstrated that exon 2 skipping bypasses exon 2 mutations in B-ALL cells and allows expression of the N-terminally truncated CD19 variant, which fails to trigger killing by CART-19 but partly rescues defects associated with CD19 loss. Thus, this mechanism of resistance is based on a combination of deleterious mutations and ensuing selection for alternatively spliced RNA isoforms. SIGNIFICANCE: CART-19 yield 70% response rates in patients with B-ALL, but also produce escape variants. We discovered that the underlying mechanism is the selection for preexisting alternatively spliced CD19 isoforms with the compromised CART-19 epitope. This mechanism suggests a possibility of targeting alternative CD19 ectodomains, which could improve survival of patients with B-cell neoplasms.

Indexed as

Alternative SplicingImmunotherapyMutationAntigens, CD19B-LymphocytesCell MembraneEpitopesExonsHumansPrecursor B-Cell Lymphoblastic Leukemia-LymphomaProtein BindingReceptors, Antigen, T-CellRecombinant Fusion ProteinsRecurrenceRNA-Binding ProteinsRNA, MessengerAntigens, CD19EpitopesReceptors, Antigen, T-CellRecombinant Fusion ProteinsRNA-Binding ProteinsRNA, MessengerSerine-Arginine Splicing FactorsSRSF3 protein, human

Identifiers

PMID26516065
PMCPMC4670800
OpenAlexW2179454156

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.