Evidence map›Paper›PMID 26515753›Full record

ArticleScientific reports2015

The C-terminal region of the non-structural protein 2B from Hepatitis A Virus demonstrates lipid-specific viroporin-like activity.

Ashutosh Shukla, Debajit Dey, Kamalika Banerjee, Anshu Nain, Manidipa Banerjee

Abstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  16. Inhibitor-Based Therapeutics for Treatment of Viral Hepatitis.Journal of clinical and translational hepatology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ashutosh ShuklaKusuma School of Biological Sciences, Indian Institute of Technology-Delhi, Hauz Khas, New Delhi -110016, India.
Debajit DeyKusuma School of Biological Sciences, Indian Institute of Technology-Delhi, Hauz Khas, New Delhi -110016, India.
Kamalika BanerjeeKusuma School of Biological Sciences, Indian Institute of Technology-Delhi, Hauz Khas, New Delhi -110016, India.
Anshu NainKusuma School of Biological Sciences, Indian Institute of Technology-Delhi, Hauz Khas, New Delhi -110016, India.
Manidipa BanerjeeKusuma School of Biological Sciences, Indian Institute of Technology-Delhi, Hauz Khas, New Delhi -110016, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viroporins are virally encoded, membrane-active proteins, which enhance viral replication and assist in egress of viruses from host cells. The 2B proteins in the picornaviridae family are known to have viroporin-like properties, and play critical roles during virus replication. The 2B protein of Hepatitis A Virus (2B), an unusual picornavirus, is somewhat dissimilar from its analogues in several respects. HAV 2B is approximately 2.5 times the length of other 2B proteins, and does not disrupt calcium homeostasis or glycoprotein trafficking. Additionally, its membrane penetrating properties are not yet clearly established. Here we show that the membrane interacting activity of HAV 2B is localized in its C-terminal region, which contains an alpha-helical hairpin motif. We show that this region is capable of forming small pores in membranes and demonstrates lipid specific activity, which partially rationalizes the intracellular localization of full-length 2B. Using a combination of biochemical assays and molecular dynamics simulation studies, we also show that HAV 2B demonstrates a marked propensity to dimerize in a crowded environment, and probably interacts with membranes in a multimeric form, a hallmark of other picornavirus viroporins. In sum, our study clearly establishes HAV 2B as a bona fide viroporin in the picornaviridae family.

Indexed as

Amino Acid SequenceCircular DichroismDimerizationDynamic Light ScatteringGreen Fluorescent ProteinsHEK293 CellsHepatitis A virusHumansLiposomesMicroscopy, FluorescenceMolecular Dynamics SimulationMolecular Sequence DataMutagenesis, Site-DirectedPeptidesProtein Structure, SecondaryProtein Structure, Tertiary2B protein, hepatitis A virusenhanced green fluorescent proteinGreen Fluorescent ProteinsLiposomesPeptidesRecombinant Fusion ProteinsViral Nonstructural Proteins

Identifiers

PMID26515753
PMCPMC4626808

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.