Evidence map›Paper›PMID 26515067›Full record

ArticleThe Journal of biological chemistry2015

The Crystal Structure of an Integral Membrane Fatty Acid α-Hydroxylase.

Guangyu Zhu, Mary Koszelak-Rosenblum, Sara M Connelly, Mark E Dumont, Michael G Malkowski

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 63 citations in OpenAlex.

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  11. Structure and Function of Alkane Monooxygenase (AlkB).Accounts of chemical research · 2023
    Review
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Guangyu ZhuFrom the Hauptman-Woodward Medical Research Institute, Buffalo, New York 14203.
Mary Koszelak-RosenblumFrom the Hauptman-Woodward Medical Research Institute, Buffalo, New York 14203.
Sara M Connellythe Departments of Biochemistry and Biophysics and.
Mark E Dumontthe Departments of Biochemistry and Biophysics and Pediatrics, University of Rochester School of Medicine and Dentistry, Rochester, New York 14642, and.
Michael G MalkowskiFrom the Hauptman-Woodward Medical Research Institute, Buffalo, New York 14203, the Department of Structural Biology, State University of New York at Buffalo, Buffalo, New York 14203 mgm22@buffalo.edu.
Hauptman-Woodward Medical Research Institute · USUniversity of Rochester · US

Funding

Multi-Level Optimization of Membrane Proteins for CrystallographyU54GM094611 · NIGMS · HAUPTMAN-WOODWARD MEDICAL RESEARCH INST · PI DUMONT, MARK E. · 2010 to 2014
$6.3M
NCI NIH HHS Y1-CO-1020NIGMS NIH HHS U54 GM094611NIGMS NIH HHS U54GM094611NIGMS NIH HHS Y1-GM-1104
6 · The paper itself

Abstract

Neuronal electrical impulse propagation is facilitated by the myelin sheath, a compact membrane surrounding the axon. The myelin sheath is highly enriched in galactosylceramide (GalCer) and its sulfated derivative sulfatide. Over 50% of GalCer and sulfatide in myelin is hydroxylated by the integral membrane enzyme fatty acid 2-hydroxylase (FA2H). GalCer hydroxylation contributes to the compact nature of the myelin membrane, and mutations in FA2H result in debilitating leukodystrophies and spastic paraparesis. We report here the 2.6 Å crystal structure of sphingolipid α-hydroxylase (Scs7p), a yeast homolog of FA2H. The Scs7p core is composed of a helical catalytic cap domain that sits atop four transmembrane helices that anchor the enzyme in the endoplasmic reticulum. The structure contains two zinc atoms coordinated by the side chains of 10 highly conserved histidines within a dimetal center located near the plane of the cytosolic membrane. We used a yeast genetic approach to confirm the important role of the dimetal-binding histidines in catalysis and identified Tyr-322 and Asp-323 as critical determinants involved in the hydroxylase reaction. Examination of the Scs7p structure, coupled with molecular dynamics simulations, allowed for the generation of a model of ceramide binding to Scs7p. Comparison of the Scs7p structure and substrate-binding model to the structure of steroyl-CoA desaturase revealed significant differences in the architecture of the catalytic cap domain and location of the dimetal centers with respect to the membrane. These observations provide insight into the different mechanisms of substrate binding and recognition of substrates by the hydroxylase and desaturase enzymes.

Indexed as

Amino Acid SequenceAnimalsCrystallography, X-RayHumansMixed Function OxygenasesMolecular Sequence DataProtein ConformationSequence Homology, Amino Acidfatty acid alpha-hydroxylaseMixed Function Oxygenasesceramidecrystal structureendoplasmic reticulum (ER)membrane enzymemetalloenzymemyelinsphingolipidstructural biology

Identifiers

PMID26515067
PMCPMC4705972
OpenAlexW2146948565

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.