Evidence map›Paper›PMID 26515066›Full record

ArticleThe Journal of biological chemistry2015

Conformational Changes in the Endosomal Sorting Complex Required for the Transport III Subunit Ist1 Lead to Distinct Modes of ATPase Vps4 Regulation.

Jason Tan, Brian A Davies, Johanna A Payne, Linda M Benson, David J Katzmann

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. IST1 regulates select recycling pathways.Traffic (Copenhagen, Denmark) · 2024
    Article
  4. Exosomal transmission of viruses, a two-edged biological sword.Cell communication and signaling : CCS · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Endosomal trafficking of yeast membrane proteins.Biochemical Society transactions · 2018
    Review
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Jason TanFrom the Biochemistry and Molecular Biology Department, Mayo Graduate School, and.
Brian A DaviesFrom the Biochemistry and Molecular Biology Department.
Johanna A PayneFrom the Biochemistry and Molecular Biology Department.
Linda M BensonMayo Medical Genome Facility Proteomics Core, Mayo Clinic, Rochester, Minnesota 55905.
David J KatzmannFrom the Biochemistry and Molecular Biology Department, katzmann.david@mayo.edu.
Mayo Clinic · USMayo Clinic in Arizona · USWinnMed · US

Funding

Mechanisms of Endosomal SortingR01GM073024 · NIGMS · MAYO CLINIC ROCHESTER · PI KATZMANN, DAVID J · 2005 to 2013
$2.7M
Determining the roles of Ist1 inhibition and stimulation of Vps4 ATPase activityF31GM106693 · NIGMS · MAYO CLINIC ROCHESTER · PI TAN, JASON A · 2013 to 2014
$82k
NIGMS NIH HHS F31 GM106693NIGMS NIH HHS F31GM106693NIGMS NIH HHS R01 GM073024NIGMS NIH HHS R01 GM73024
6 · The paper itself

Abstract

Intralumenal vesicle formation of the multivesicular body is a critical step in the delivery of endocytic cargoes to the lysosome for degradation. Endosomal sorting complex required for transport III (ESCRT-III) subunits polymerize on endosomal membranes to facilitate membrane budding away from the cytoplasm to generate these intralumenal vesicles. The ATPase Vps4 remodels and disassembles ESCRT-III, but the manner in which Vps4 activity is coordinated with ESCRT-III function remains unclear. Ist1 is structurally homologous to ESCRT-III subunits and has been reported to inhibit Vps4 function despite the presence of a microtubule-interacting and trafficking domain-interacting motif (MIM) capable of stimulating Vps4 in the context of other ESCRT-III subunits. Here we report that Ist1 inhibition of Vps4 ATPase activity involves two elements in Ist1: the MIM itself and a surface containing a conserved ELYC sequence. In contrast, the MIM interaction, in concert with a more open conformation of the Ist1 core, resulted in stimulation of Vps4. Addition of the ESCRT-III subunit binding partner of Ist1, Did2, also converted Ist1 from an inhibitor to a stimulator of Vps4 ATPase activity. Finally, distinct regulation of Vps4 by Ist1 corresponded with altered ESCRT-III disassembly in vitro. Together, these data support a model in which Ist1-Did2 interactions during ESCRT-III polymerization coordinate Vps4 activity with the timing of ESCRT-III disassembly.

Indexed as

Adenosine TriphosphatasesEndosomal Sorting Complexes Required for TransportMutagenesis, Site-DirectedProtein ConformationProtein FoldingProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsVesicular Transport ProteinsAdenosine TriphosphatasesEndosomal Sorting Complexes Required for TransportIst1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsVesicular Transport ProteinsVPS4 protein, S cerevisiaeATPaseDid2endosomal sortingendosomal sorting complexes required for transport (ESCRT)Ist1protein conformationprotein sortingprotein stabilityVps4

Identifiers

PMID26515066
PMCPMC4706005
OpenAlexW2155376005

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.