Evidence map›Paper›PMID 26514987›Full record

ArticleEvolution; international journal of organic evolution2015

Conservative and compensatory evolution in oxidative phosphorylation complexes of angiosperms with highly divergent rates of mitochondrial genome evolution.

Justin C Havird, Nicholas S Whitehill, Christopher D Snow, Daniel B Sloan

Open access · greenAbstract read
In one paragraph

Article in Evolution; international journal of organic evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Positive and relaxed selection on mitochondrial DNA in parasitic versus predatory mites.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2026
    Article
  5. Sensitivity of genome-wide tests for mitonuclear genetic incompatibilities.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2026
    Article
  6. Article
  7. Article
  8. Survey ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
  9. Article
  10. Nuclear compensatory evolution driven by mito-nuclear incompatibilities.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Genome copy number predicts extreme evolutionary rate variation in plant mitochondrial DNA.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Article
  13. Review
  14. Mutation pressure, drift, and the pace of molecular coevolution.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  15. Article
  16. Review
  17. Article
  18. Genomic Signatures of Mitonuclear Coevolution in Mammals.Molecular biology and evolution · 2022
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Justin C HavirdDepartment of Biology, Colorado State University, Fort Collins, Colorado, 80523. justin.havird@colostate.edu.
Nicholas S WhitehillDepartment of Computer Science, Colorado State University, Fort Collins, Colorado, 80523.
Christopher D SnowDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, Colorado, 80523.
Daniel B SloanDepartment of Biology, Colorado State University, Fort Collins, Colorado, 80523. dan.sloan@colostate.edu.
Colorado State University · US

Funding

Supplement request for 1F32GM116361-01F32GM116361 · NIGMS · COLORADO STATE UNIVERSITY · PI HAVIRD, JUSTIN C · 2015 to 2017
$168k
NIGMS NIH HHS F32 GM116361NIGMS NIH HHS F32GM116361
6 · The paper itself

Abstract

Interactions between nuclear and mitochondrial gene products are critical for eukaryotic cell function. Nuclear genes encoding mitochondrial-targeted proteins (N-mt genes) experience elevated rates of evolution, which has often been interpreted as evidence of nuclear compensation in response to elevated mitochondrial mutation rates. However, N-mt genes may be under relaxed functional constraints, which could also explain observed increases in their evolutionary rate. To disentangle these hypotheses, we examined patterns of sequence and structural evolution in nuclear- and mitochondrial-encoded oxidative phosphorylation proteins from species in the angiosperm genus Silene with vastly different mitochondrial mutation rates. We found correlated increases in N-mt gene evolution in species with fast-evolving mitochondrial DNA. Structural modeling revealed an overrepresentation of N-mt substitutions at positions that directly contact mutated residues in mitochondrial-encoded proteins, despite overall patterns of conservative structural evolution. These findings support the hypothesis that selection for compensatory changes in response to mitochondrial mutations contributes to the elevated rate of evolution in N-mt genes. We discuss these results in light of theories implicating mitochondrial mutation rates and mitonuclear coevolution as drivers of speciation and suggest comparative and experimental approaches that could take advantage of heterogeneity in rates of mtDNA evolution across eukaryotes to evaluate such theories.

Indexed as

Evolution, MolecularGenome, PlantOxidative PhosphorylationGenome, MitochondrialMitochondrial ProteinsMutation RateSequence Analysis, DNASileneMitochondrial ProteinsCytonuclearelectron transportevolutionary genomicsmitochondrial mutationsmitonuclear interactions

Identifiers

PMID26514987
PMCPMC4715514
OpenAlexW2210699270

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.