Evidence map›Paper›PMID 26513823›Full record

ArticleJournal of the Pediatric Infectious Diseases Society2015

Emergence of Rotavirus G12P[8] in St. Louis During the 2012-2013 Rotavirus Season.

Kristine M Wylie, George M Weinstock, Gregory A Storch

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the Pediatric Infectious Diseases Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Observational
  2. Group A rotavirus surveillance before vaccine introduction in Italy, September 2014 to August 2017.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2019
    Article
  3. Resurgence of Rotavirus Genotype G12 in St. Louis During the 2014-2015 Rotavirus Season.Journal of the Pediatric Infectious Diseases Society · 2017
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kristine M WylieThe Department of Pediatrics The Genome Institute, Washington University School of Medicine, St. Louis, Missouri.
George M WeinstockThe Genome Institute, Washington University School of Medicine, St. Louis, Missouri.
Gregory A StorchThe Department of Pediatrics.
Washington University in St. Louis · US

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
XRAY CRYSTALLOGRAPHIC STRUCTURE ANALYSIS: PROTEIN SORTINGP41RR001081 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 1985 to 2011
$17.6M
Sequencing the Human MicrobiomeU54HG004968 · NHGRI · WASHINGTON UNIVERSITY · PI WILSON, RICHARD K. · 2009 to 2012
$16.7M
NCRR NIH HHS P41 RR001081NCRR NIH HHS P41 RR-01081NHGRI NIH HHS U54 HG003079NHGRI NIH HHS U54 HG004968NIAID NIH HHS HHSN272200900041CPHS HHS HHSN272200900041C
6 · The paper itself

Abstract

backgroundWe observed an increase in the number of rotavirus cases in the St. Louis area during the 2012-2013 rotavirus season compared with recent seasons. We aimed to determine whether the rotavirus cases during the 2012-2013 rotavirus season were of types not included in licensed vaccines.

methodsMicrobiology laboratories of 3 children's hospitals in St. Louis provided samples that were positive using rapid antigen tests from 2010 to 2013. The majority of samples were from St. Louis Children's Hospital. We determined rotavirus genotypes by polymerase chain reaction tests and further characterized a subset of viruses by genome sequencing and comparative sequence analysis.

resultsEighty-six percent (24 of 28) of typed viruses analyzed from the 2012-2013 rotavirus season were G12. We performed whole genome sequencing on 8 G12 viruses, all of which were VP4 type P[8]. The sequenced viruses showed differences from vaccine strains in major antigenic epitopes on the VP7 protein, but most epitopes on VP4 were conserved. Rotavirus vaccine histories were available for 11 G12 cases, of whom 10 had not been vaccinated.

conclusionsG12 was a dominant community-wide genotype in 2013. Most of the G12 cases for whom vaccine histories were available had not received rotavirus vaccine. The experience demonstrates the potential for rapid shifts in rotavirus genotype distribution and underscores the need for vigilant surveillance to detect unusual genotypes that might escape from vaccine protection.

Indexed as

Child, PreschoolGenome, ViralGenotypeHumansInfantMissouriPhylogenyRotavirusRotavirus InfectionsRotavirus VaccinesSeasonsVaccinationRotavirus VaccinesG12genomicrotavirus

Identifiers

PMID26513823
PMCPMC4681384
OpenAlexW2096966974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.